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gripss v2.4.rc1

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@charlesshale charlesshale released this 18 Dec 22:09
· 2494 commits to master since this release

Technical:

  • handle Gridss VCF with sample IDs in reversed order

Panel:

  • added panel soft filters: qual-per-AD and modified AF
  • set panel config by default if in target regions mode
    -hard_min_tumor_qual 200
    -min_qual_break_point 1000
    -min_qual_break_end 1000
    -filter_sgls
    -qual_per_ad 30
    -modified_af 0.03
    -modified_af_hotspot 0.005