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lilac v1.6
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@charlesshale charlesshale released this 05 Feb 03:07
· 2145 commits to master since this release
lilac-v1.6
e6e000e

Technical:

  • tumor-only mode write fragment into tumor coverage columns instead of ref

Bugs:

  • protect against deletion in read near end of coding region

Config:

  • in tumor-only mode specify the tumor BAM file with -tumor_bam instead of -reference_bam
  • removed 'write_all_files', instead use 'write_types selecting 1 or more from SUMMARY, FRAGMENTS, READS, REF_COUNTS
Assets 3
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