0.9.0

hdmf-zarr 0.9.0

0.8.0

0.8.0 (June 4, 2024)

Bug Fixes

• Fixed bug when opening a file in with mode=r+. The file will open without using the consolidated metadata. @mavaylon1 #182
• Fixed bug on how we access scalar arrays. Added warning filter for Zarr deprecation of NestedDirectoryStore. Fixed bug on how we write a dataset of references. @mavaylon1 #195

0.7.0

hdmf-zarr 0.7.0

0.6.0

hdmf-zarr 0.6.0

0.5.0

hdmf-zarr 0.5.0

0.4.0

0.4.0 (October 3, 2023)

Enhancements

• Enhanced ZarrIO to resolve object references lazily on read similar to HDMF's HDF5IO backend. @mavaylon1 #120
• Updated storage of references to also save the object_id and source_object_id. While not strictly necessary this information is useful for validation and rigor of references. @oruebel #57

New Features

• Added parallel write support for the ZarrIO for datasets wrapped with GenericDataChunkIterator. @CodyCBakerPhD #118 @oruebel #128

Dependencies

• Updated HDMF and PyNWB version to the most recent release @mavaylon1 #120
• Updated minimum Python version from 3.7 to 3.8 @mavaylon1 #120
• Added threadpoolctl dependency for parallel write. @CodyCBakerPhD #118
• Added support for specifying optional dependencies and add optional dependency for tqdm used in parallel write. @CodyCBakerPhD #118

Bug fixes

• Fixed error in deploy workflow. @mavaylon1 #109
• Fixed build error for ReadtheDocs by degrading numpy for python 3.7 support. @mavaylon1 #115
• Fixed bug in the resolution of references to Containers. Previously references were only resolved to Builders. @mavaylon1 #120

Latest (updated on 2024-09-19 15:09 UTC)

latest

Update deploy_release.yml (#132)

0.3.0

0.3.0 (July 21, 2023)

New Features

• Added support, tests, and docs for using DirectoryStore, TempStore, and
  NestedDirectoryStore Zarr storage backends with ZarrIO and NWBZarrIO.
  @oruebel #62

Minor enhancements

• Updated handling of references on read to simplify future integration of file-based Zarr
  stores (e.g., ZipStore or database stores). @oruebel #62
• Added can_read classmethod to ZarrIO. @bendichter #97

Test suite enhancements

• Modularized unit tests to simplify running tests for multiple Zarr storage backends.
  @oruebel #62
• Fixed CI testing of minimum and optional installation requirement. @rly
  #99
• Updated tests to handle upcoming changes to HDMFIO. @rly
  #102

Docs

• Added developer documentation on how to integrate new storage backends with ZarrIO. @oruebel
  #62

API Changes

• Removed unused filepath argument from ZarrIO.get_builder_exists_on_disk #62

Bug fixes

• Fixed error in nightly CI. @rly #93

0.2.0

Bugs

• Updated the storage of links/references to use paths relative to the current Zarr file to avoid breaking
  links/reference when moving Zarr files @oruebel #46
• Fixed bugs in requirements defined in setup.py @oruebel #46
• Fixed bug regarding Sphinx external links @mavaylon1 #53
• Updated gallery tests to use test_gallery.py and necessary package dependcies
  @mavaylon1 #53
• Updated dateset used in conversion tutorial, which caused warnings
  @oruebel #56

Docs

• Added tutorial illustrating how to create a new NWB file with NWBZarrIO
  @oruebel #46
• Added docs for describing the mapping of HDMF schema to Zarr storage
  @oruebel #48
• Added docs/gallery/resources for storing local files used by the tutorial galleries
  @oruebel #61
• Removed dependency on dandi library for data download in the conversion tutorial by storing the NWB files as
  local resources @oruebel #61

0.1.6

hdmf_zarr 0.1.6