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Fix hdmf-zarr workflow #1222

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merged 2 commits into from
Dec 19, 2024
Merged

Fix hdmf-zarr workflow #1222

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e1527e2
Fix hdmf-zarr workflow
rly Dec 19, 2024
443e3b9
Update CHANGELOG.md
rly Dec 19, 2024
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9 changes: 4 additions & 5 deletions .github/workflows/run_hdmf_zarr_tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -21,18 +21,17 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.10' # use 3.10 until hdmf-zarr updates versioneer.py which breaks on newer python
python-version: '3.13'

- name: Update pip
run: python -m pip install --upgrade pip

- name: Clone HDMF-Zarr and install dev branch of HDMF
run: |
python -m pip list
git clone https://github.com/hdmf-dev/hdmf-zarr.git --recurse-submodules
git clone https://github.com/hdmf-dev/hdmf-zarr.git
cd hdmf-zarr
python -m pip install -r requirements-dev.txt # do not install the pinned install requirements
python -m pip install . # this will install a different version of hdmf from the current one
python -m pip install .[test] # this will install a different version of hdmf from the current one
cd ..
python -m pip uninstall -y hdmf # uninstall the other version of hdmf
python -m pip install . # reinstall current branch of hdmf
Expand All @@ -41,4 +40,4 @@ jobs:
- name: Run HDMF-Zarr tests on HDMF-Zarr dev branch
run: |
cd hdmf-zarr
pytest
pytest -v
1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -10,6 +10,7 @@
- Added support for expandable datasets of references for untyped and compound data types. @stephprince [#1188](https://github.com/hdmf-dev/hdmf/pull/1188)
- Improved html representation of data in `Container` objects. @h-mayorquin [#1100](https://github.com/hdmf-dev/hdmf/pull/1100)
- Added error when using colon for `Container` name. A colon cannot be used as a group name when writing to Zarr on Windows. @stephprince [#1202](https://github.com/hdmf-dev/hdmf/pull/1202)
- Adjusted testing for hdmf-zarr. @rly [#1222](https://github.com/hdmf-dev/hdmf/pull/1222)

### Bug fixes
- Fixed inaccurate error message when validating reference data types. @stephprince [#1199](https://github.com/hdmf-dev/hdmf/pull/1199)
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