Skip to content
/ stride Public

STRIDE protein secondary structure assignment

0 stars 1 fork Branches Tags Activity
Star
Notifications You must be signed in to change notification settings

heiniglab/stride

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
doc
doc
 
 
HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS
HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS
 
 
Makefile
Makefile
 
 
README.md
README.md
 
 
area.c
area.c
 
 
asngener.c
asngener.c
 
 
chk_atom.c
chk_atom.c
 
 
chk_res.c
chk_res.c
 
 
chkchain.c
chkchain.c
 
 
command.c
command.c
 
 
contact_map.c
contact_map.c
 
 
contact_order.c
contact_order.c
 
 
die.c
die.c
 
 
dssp.c
dssp.c
 
 
elem.c
elem.c
 
 
escape.c
escape.c
 
 
filename.c
filename.c
 
 
fillasn.c
fillasn.c
 
 
geometry.c
geometry.c
 
 
hbenergy.c
hbenergy.c
 
 
helix.c
helix.c
 
 
hydrbond.c
hydrbond.c
 
 
initchn.c
initchn.c
 
 
measure.c
measure.c
 
 
memory.c
memory.c
 
 
mergepat.c
mergepat.c
 
 
molscr.c
molscr.c
 
 
nsc.c
nsc.c
 
 
nsc.h
nsc.h
 
 
one2thr.c
one2thr.c
 
 
outseq.c
outseq.c
 
 
p_atom.c
p_atom.c
 
 
p_compnd.c
p_compnd.c
 
 
p_endmdl.c
p_endmdl.c
 
 
p_expdta.c
p_expdta.c
 
 
p_helix.c
p_helix.c
 
 
p_jrnl.c
p_jrnl.c
 
 
p_model.c
p_model.c
 
 
p_rem.c
p_rem.c
 
 
p_sheet.c
p_sheet.c
 
 
p_ssbond.c
p_ssbond.c
 
 
p_turn.c
p_turn.c
 
 
pdb1fmc.pdb
pdb1fmc.pdb
 
 
pdb1mjh.pdb
pdb1mjh.pdb
 
 
pdb1res.pdb
pdb1res.pdb
 
 
pdb2btm.pdb
pdb2btm.pdb
 
 
pdbasn.c
pdbasn.c
 
 
phipsi.c
phipsi.c
 
 
place_h.c
place_h.c
 
 
protot.h
protot.h
 
 
rdmap.c
rdmap.c
 
 
rdpdb.c
rdpdb.c
 
 
report.c
report.c
 
 
sheet.c
sheet.c
 
 
splitstr.c
splitstr.c
 
 
ssbond.c
ssbond.c
 
 
stred.c
stred.c
 
 
stride
stride
 
 
stride.c
stride.c
 
 
stride.h
stride.h
 
 
stride.tar.gz
stride.tar.gz
 
 
strutil.c
strutil.c
 
 
thr2one.c
thr2one.c
 
 
tolostr.c
tolostr.c
 
 
turn.c
turn.c
 
 

Repository files navigation

STRIDE

STRIDE is a sotware for protein secondary structure assignment based on 3D structures as input.

The software has been described in this publication:

Frishman D, Argos P. Knowledge-Based Protein Secondary Structure Assignment Proteins: Structure, Function, and Genetics 23:566-579 (1995)

An interactive webserver is available here:

http://stride.helmholtz-munich.de/cgi-bin/stride/stridecgi.py

Building from source

To comile the code please use

make stride

Then copy the binary to a place that is in your execution path or use it locally.

User documentation

doc/

License note

Please note that all source code contains license information. The following exception is in place for the license of the NSC software: NSC is free for all in the special case if the NSC program is used, copied or in any form applied as integral part of STRIDE and only in this context.

About

STRIDE protein secondary structure assignment

Resources

Readme
Activity
Custom properties

Stars

0 stars

Watchers

1 watching

Forks

1 fork
Report repository

Releases

No releases published

Packages

No packages published

Languages