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Add Recorder samples and enable TAU traces #19

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Add Recorder samples and enable TAU traces #19

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f7269d3
Fix dxt comflict with recorder
onewbiek Apr 19, 2024
dbffdc4
Fix dxt merge conflict
onewbiek May 1, 2024
7d9603f
Cut redundant code
onewbiek May 3, 2024
80b367f
Bug Fix in DXT Analysis
hammad45 May 3, 2024
d3f234f
Merge branch 'master' into master
hammad45 May 3, 2024
491e60e
Extend to support otf2 traces
onewbiek Jun 4, 2024
ee66d48
Add recorder samples
onewbiek Jun 12, 2024
778241a
Add otf2 parser
onewbiek Jul 26, 2024
0ee3751
Modify CI
onewbiek Jul 26, 2024
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16 changes: 10 additions & 6 deletions .github/workflows/drishti-darshan-3.4.0.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -59,37 +59,41 @@ jobs:
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --issues sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --issues sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run Drishti (--code)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --code sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --code sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--verbose)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --verbose sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --verbose sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--path)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --path sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --path sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--html)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --html sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --html sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--svg)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --svg sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --svg sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--verbose) recorder
run: |
drishti --verbose sample/recorder/lammps_lj_flow_2d_mpiio

- name: Upload Artifact
if: always()
Expand Down
16 changes: 10 additions & 6 deletions .github/workflows/drishti-darshan-3.4.1.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -59,37 +59,41 @@ jobs:
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --issues sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --issues sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run Drishti (--code)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --code sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --code sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--verbose)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --verbose sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --verbose sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--path)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --path sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --path sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--html)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --html sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --html sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--svg)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --svg sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --svg sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--verbose) recorder
run: |
drishti --verbose sample/recorder/lammps_lj_flow_2d_mpiio

- name: Upload Artifact
if: always()
Expand Down
16 changes: 10 additions & 6 deletions .github/workflows/drishti-darshan-3.4.2.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -59,37 +59,41 @@ jobs:
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --issues sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --issues sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run Drishti (--code)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --code sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --code sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--verbose)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --verbose sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --verbose sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--path)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --path sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --path sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--html)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --html sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --html sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--svg)
run: |
export PATH=/opt/darshan/bin:$PATH

drishti --svg sample/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan
drishti --svg sample/darshan/jlbez_8a_benchmark_write_parallel_id1321662_8-21-5892-15802854900629188750_106.darshan

- name: Run DXT Explorer (--verbose) recorder
run: |
drishti --verbose sample/recorder/lammps_lj_flow_2d_mpiio

- name: Upload Artifact
if: always()
Expand Down
117 changes: 107 additions & 10 deletions drishti/handlers/handle_darshan.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -81,7 +81,10 @@ def handler():

information = darshanll.log_get_job(log)

log_version = information['metadata']['lib_ver']
if 'log_ver' in information:
log_version = information['log_ver']
else:
log_version = information['metadata']['lib_ver']
library_version = darshanll.get_lib_version()

# Make sure log format is of the same version
Expand Down Expand Up @@ -144,6 +147,100 @@ def handler():
df_mpiio = None

total_size_mpiio = 0

dxt_posix = None
dxt_posix_read_data = None
dxt_posix_write_data = None
dxt_mpiio = None

df_lustre = None
if "LUSTRE" in report.records:
df_lustre = report.records['LUSTRE'].to_df()

if args.backtrace:
if "DXT_POSIX" in report.records:
dxt_posix = report.records["DXT_POSIX"].to_df()
dxt_posix = pd.DataFrame(dxt_posix)
if "address_line_mapping" not in dxt_posix:
args.backtrace = False
else:
read_id = []
read_rank = []
read_length = []
read_offsets = []
read_end_time = []
read_start_time = []
read_operation = []

write_id = []
write_rank = []
write_length = []
write_offsets = []
write_end_time = []
write_start_time = []
write_operation = []

for r in zip(dxt_posix['rank'], dxt_posix['read_segments'], dxt_posix['write_segments'], dxt_posix['id']):
if not r[1].empty:
read_id.append([r[3]] * len((r[1]['length'].to_list())))
read_rank.append([r[0]] * len((r[1]['length'].to_list())))
read_length.append(r[1]['length'].to_list())
read_end_time.append(r[1]['end_time'].to_list())
read_start_time.append(r[1]['start_time'].to_list())
read_operation.append(['read'] * len((r[1]['length'].to_list())))
read_offsets.append(r[1]['offset'].to_list())

if not r[2].empty:
write_id.append([r[3]] * len((r[2]['length'].to_list())))
write_rank.append([r[0]] * len((r[2]['length'].to_list())))
write_length.append(r[2]['length'].to_list())
write_end_time.append(r[2]['end_time'].to_list())
write_start_time.append(r[2]['start_time'].to_list())
write_operation.append(['write'] * len((r[2]['length'].to_list())))
write_offsets.append(r[2]['offset'].to_list())

read_id = [element for nestedlist in read_id for element in nestedlist]
read_rank = [element for nestedlist in read_rank for element in nestedlist]
read_length = [element for nestedlist in read_length for element in nestedlist]
read_offsets = [element for nestedlist in read_offsets for element in nestedlist]
read_end_time = [element for nestedlist in read_end_time for element in nestedlist]
read_operation = [element for nestedlist in read_operation for element in nestedlist]
read_start_time = [element for nestedlist in read_start_time for element in nestedlist]

write_id = [element for nestedlist in write_id for element in nestedlist]
write_rank = [element for nestedlist in write_rank for element in nestedlist]
write_length = [element for nestedlist in write_length for element in nestedlist]
write_offsets = [element for nestedlist in write_offsets for element in nestedlist]
write_end_time = [element for nestedlist in write_end_time for element in nestedlist]
write_operation = [element for nestedlist in write_operation for element in nestedlist]
write_start_time = [element for nestedlist in write_start_time for element in nestedlist]

dxt_posix_read_data = pd.DataFrame(
{
'id': read_id,
'rank': read_rank,
'length': read_length,
'end_time': read_end_time,
'start_time': read_start_time,
'operation': read_operation,
'offsets': read_offsets,
})

dxt_posix_write_data = pd.DataFrame(
{
'id': write_id,
'rank': write_rank,
'length': write_length,
'end_time': write_end_time,
'start_time': write_start_time,
'operation': write_operation,
'offsets': write_offsets,
})

if "DXT_MPIIO" in report.records:
dxt_mpiio = report.records["DXT_MPIIO"].to_df()
dxt_mpiio = pd.DataFrame(dxt_mpiio)


# Since POSIX will capture both POSIX-only accesses and those comming from MPI-IO, we can subtract those
if total_size_posix > 0 and total_size_posix >= total_size_mpiio:
Expand Down Expand Up @@ -262,7 +359,7 @@ def handler():
detected_files.columns = ['id', 'total_reads', 'total_writes']
detected_files.loc[:, 'id'] = detected_files.loc[:, 'id'].astype(str)

check_small_operation(total_reads, total_reads_small, total_writes, total_writes_small, detected_files, modules, file_map, df_posix)
check_small_operation(total_reads, total_reads_small, total_writes, total_writes_small, detected_files, modules, file_map, dxt_posix, dxt_posix_read_data, dxt_posix_write_data)

#########################################################################################################################################################################

Expand All @@ -271,7 +368,7 @@ def handler():
total_mem_not_aligned = df['counters']['POSIX_MEM_NOT_ALIGNED'].sum()
total_file_not_aligned = df['counters']['POSIX_FILE_NOT_ALIGNED'].sum()

check_misaligned(total_operations, total_mem_not_aligned, total_file_not_aligned, modules)
check_misaligned(total_operations, total_mem_not_aligned, total_file_not_aligned, modules, file_map, df_lustre, dxt_posix, dxt_posix_read_data)

#########################################################################################################################################################################

Expand All @@ -280,7 +377,7 @@ def handler():
max_read_offset = df['counters']['POSIX_MAX_BYTE_READ'].max()
max_write_offset = df['counters']['POSIX_MAX_BYTE_WRITTEN'].max()

check_traffic(max_read_offset, total_read_size, max_write_offset, total_written_size)
check_traffic(max_read_offset, total_read_size, max_write_offset, total_written_size, dxt_posix, dxt_posix_read_data, dxt_posix_write_data)

#########################################################################################################################################################################

Expand All @@ -305,7 +402,7 @@ def handler():
write_random = total_writes - write_consecutive - write_sequential
#print('WRITE Random: {} ({:.2f}%)'.format(write_random, write_random / total_writes * 100))

check_random_operation(read_consecutive, read_sequential, read_random, total_reads, write_consecutive, write_sequential, write_random, total_writes)
check_random_operation(read_consecutive, read_sequential, read_random, total_reads, write_consecutive, write_sequential, write_random, total_writes, dxt_posix, dxt_posix_read_data, dxt_posix_write_data)

#########################################################################################################################################################################

Expand Down Expand Up @@ -385,7 +482,7 @@ def handler():

column_names = ['id', 'data_imbalance']
detected_files = pd.DataFrame(detected_files, columns=column_names)
check_shared_data_imblance(stragglers_count, detected_files, file_map)
check_shared_data_imblance(stragglers_count, detected_files, file_map, dxt_posix, dxt_posix_read_data, dxt_posix_write_data)

# POSIX_F_FASTEST_RANK_TIME
# POSIX_F_SLOWEST_RANK_TIME
Expand Down Expand Up @@ -442,7 +539,7 @@ def handler():

column_names = ['id', 'write_imbalance']
detected_files = pd.DataFrame(detected_files, columns=column_names)
check_individual_write_imbalance(imbalance_count, detected_files, file_map)
check_individual_write_imbalance(imbalance_count, detected_files, file_map, dxt_posix, dxt_posix_write_data)

imbalance_count = 0

Expand All @@ -458,7 +555,7 @@ def handler():

column_names = ['id', 'read_imbalance']
detected_files = pd.DataFrame(detected_files, columns=column_names)
check_individual_read_imbalance(imbalance_count, detected_files, file_map)
check_individual_read_imbalance(imbalance_count, detected_files, file_map, dxt_posix, dxt_posix_read_data)

#########################################################################################################################################################################

Expand Down Expand Up @@ -493,7 +590,7 @@ def handler():
column_names = ['id', 'absolute_indep_reads', 'percent_indep_reads']
detected_files = pd.DataFrame(detected_files, columns=column_names)

check_mpi_collective_read_operation(mpiio_coll_reads, mpiio_indep_reads, total_mpiio_read_operations, detected_files, file_map)
check_mpi_collective_read_operation(mpiio_coll_reads, mpiio_indep_reads, total_mpiio_read_operations, detected_files, file_map, dxt_mpiio)

df_mpiio_collective_writes = df_mpiio['counters'] #.loc[(df_mpiio['counters']['MPIIO_COLL_WRITES'] > 0)]

Expand All @@ -518,7 +615,7 @@ def handler():
column_names = ['id', 'absolute_indep_writes', 'percent_indep_writes']
detected_files = pd.DataFrame(detected_files, columns=column_names)

check_mpi_collective_write_operation(mpiio_coll_writes, mpiio_indep_writes, total_mpiio_write_operations, detected_files, file_map)
check_mpi_collective_write_operation(mpiio_coll_writes, mpiio_indep_writes, total_mpiio_write_operations, detected_files, file_map, dxt_mpiio)

#########################################################################################################################################################################

Expand Down
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