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Synchronize stable with develop branch (#172)
* fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * Merge tools/llsm_importer (#81) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format --------- Co-authored-by: Houjun Tang <[email protected]> * added a tutorial for llsm_importer * added a tutorial for llsm_importer * Adding tutorial for llsm_importer tool. (#84) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer --------- Co-authored-by: Houjun Tang <[email protected]> * make sure the line feed is included for string attribute * update timing for overall completion time * Update .gitlab-ci.yml removing Cori Remove Cori CI in advance of Cori's decommission by the end of the month. * Remove unnecessary fflush call Signed-off-by: Chen Wang <[email protected]> * update formatting * LLSM_importer Tutorial and Timing for job completion time. (#86) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting --------- Co-authored-by: Houjun Tang <[email protected]> * Fix Issue #85, server segfault when another client application with different number of ranks connects to it * Committing clang-format changes * update metrics * Update .gitlab-ci.yml * update VPIC output timing precision (#88) * update VPIC output timing precision * update timing to make consistent * llsm_importer (#1) formatter on llsm_importer * Tiff Parallel Reader sync to latest version (#89) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting * llsm_importer (#1) formatter on llsm_importer --------- Co-authored-by: Houjun Tang <[email protected]> * Update .gitlab-ci.yml * add type for kvtag structure (#2) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * Feature/metadata type (#3) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake * Data type for new kvtag (including refactoring and serde framework) (#90) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting * llsm_importer (#1) formatter on llsm_importer * add type for kvtag structure (#2) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * Feature/metadata type (#3) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake --------- Co-authored-by: Houjun Tang <[email protected]> * LLSM Importer update: new job script + new data type update on kvtags (#92) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting * update metrics * forcibly enable openmp * adding C flags from the mex compiler * Update .gitlab-ci.yml * updated code * clang format * llsm_importer (#1) formatter on llsm_importer * add type for kvtag structure (#2) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * Feature/metadata type (#3) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake * update * print numWorkers * update scripts * update script * update script * formatting * update llsm_tools.c * remove unnecessary hash table init --------- Co-authored-by: Houjun Tang <[email protected]> Co-authored-by: Jean Luca Bez <[email protected]> * Update .gitlab-ci.yml * fix warnings, commenting off 'find_path' and 'find_library' for Mercury in src/commons/CMakeLists.txt (#93) * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting * update metrics * forcibly enable openmp * adding C flags from the mex compiler * Update .gitlab-ci.yml * updated code * clang format * llsm_importer (#1) formatter on llsm_importer * add type for kvtag structure (#2) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * Feature/metadata type (#3) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake * update * print numWorkers * update scripts * update script * update script * formatting * update llsm_tools.c * remove unnecessary hash table init * update script * fix some warnings * fix some warnings * update * update * fix warning * update * update * update * update * update * update * update * update * update * fix warnings * fix warnings * fix warnings * fix warnings * fix warnings * fix warnings * fix warnings * update * update * update * server address and file paths using 1024, TMP_DIR path using 1024/2, NAME_MAX for appname and objname takes 1024/2, HOSTNAME takes 1024/8, NA_INFO_STRING takes 1024/4 * update * update * update * update --------- Co-authored-by: Houjun Tang <[email protected]> Co-authored-by: Jean Luca Bez <[email protected]> * Update clang-format-fix.yml * Update clang-format-fix.yml * Increase the default server cache size to 32GB and flush frequency to 30s * Committing clang-format changes * add FindMERCURY.cmake * update commons/CMakeLists.txt * Fix unnecessary memory allocation (#103) * Fix an issue with opening a deleted container, added test (#101) * Fix an issue with opening a deleted container, added test * Refactor the query aggregation process * Fix container tag delete error (#102) * Fix container tag delete error * Committing clang-format changes * Update tag delete function * Refactor metdata lookup process for tag deletion * Committing clang-format changes * Formatting and comment * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> * Fix the server cache issue when cache becomes full and needs flush (#113) * Fix the server cache issue when cache becomes full and need flush * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> * Fix a wrong option description. (#115) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake * update option message --------- Co-authored-by: Houjun Tang <[email protected]> * Install header files needed by PDCpy (#114) * Support unlimited object dimension size (#117) * Support unlimited object dimension szie * Add function description for PDC_SIZE_UNLIMITED * Fix obj_round_robin_io_all test code * Committing clang-format changes * More header files fix for PDCpy * Fix cmake path (#121) * Fix cmake path * Fix cmake path * Kvtag query (#122) * Add a new collective kvtag query api to return full/aggregated results to all clients * Committing clang-format changes * Add test code * Committing clang-format changes * Add an optimization when multiple clients issue different queries * Add test program * Fix free issue * Committing clang-format changes --------- Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com> * Rebase develop to stable (#125) * updates in documentation * update docs * trigger update * trigger update * remove extension * include docs build dependencies * update file * update metrics * Update .gitlab-ci.yml * Update .gitlab-ci.yml * update logo * Update .gitlab-ci.yml * adding recovered documentation * update text * fix typo * update CSS * increase content width * remove build docs * Refer documentation to readthedocs website (#95) * Update README.md * Update getting_started.rst * Update getting_started.rst * include updated text * fix links * fix typo * Update README.md * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * update code * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * clang format * clang format * clang-format-10 * change file name * update llsm importer * update llsm importer * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update tag names * update tag names * update query startingpos * update job scripts * fix iteration count in final report * update job scripts and benckmark program * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting * Remove unnecessary fflush call Signed-off-by: Chen Wang <[email protected]> * Fix Issue #85, server segfault when another client application with different number of ranks connects to it * Committing clang-format changes * update VPIC output timing precision (#88) * update VPIC output timing precision * update timing to make consistent * llsm_importer (#1) formatter on llsm_importer * add type for kvtag structure (#2) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * Feature/metadata type (#3) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake * add FindMERCURY.cmake * LLSM Importer update: new job script + new data type update on kvtags (#92) * remove unnecessary install block from CMakeLists.txt * update output * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribute value * change the max length of attribute value * llsm tiff import test * llsm tiff import test * llsm tiff import test * llsm tiff import test * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update code * update cmake and llsm_importer * update cmake and llsm_importer * close if in cmake * cmake fix tiff * cmake policy to suppress warning * add pdc include dir * update code * update code * update code * update code * update code * update code * update array generating method * update array generating method * update array generating method * update array generating method * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * update CMakeLists * fix return type * fix return type * add timing * add timing * fix output * llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader * fix vairable name * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * fix cmake * add scripts * add scripts * add scripts * debugging for nonMPI program * debugging for nonMPI program * debugging for nonMPI program * clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created * enable MPI * enable MPI * enlarge BCase size * enlarge BCase size * enlarge BCase size * resolve bcast count * llsm data path in script * llsm data path in script * update csv reader * update csv reader * update csv reader * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * update pdc * enlarge max write * update pdc * update pdc * update pdc * update pdc * update pdc_import.c * update pdc_import.c * update pdc_export.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update pdc_import.c * update tools/cmake * clang format * clang format * added a tutorial for llsm_importer * added a tutorial for llsm_importer * make sure the line feed is included for string attribute * update timing for overall completion time * update formatting * update metrics * forcibly enable openmp * adding C flags from the mex compiler * Update .gitlab-ci.yml * updated code * clang format * llsm_importer (#1) formatter on llsm_importer * add type for kvtag structure (#2) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * Feature/metadata type (#3) * upate metadata type system * update serde framework to coupe with the new data type system * replace unnecessary data types * adding type for pdc_kvtag_t, all occurances are fixed * update new commons CMake for publishing commons * commons compilation passed * compiled * remove unnecessary header files from installation * resolve conflict * add important files * clang formatting * update cmake * update * print numWorkers * update scripts * update script * update script * formatting * update llsm_tools.c * remove unnecessary hash table init --------- Co-authored-by: Houjun Tang <[email protected]> Co-authored-by: Jean Luca Bez <[email protected]> * fix warnings, commenting off 'find_path' and 'find_library' for Mercury in src/commons/CMakeLists.txt (#93) * Revert "update output" This reverts commit fe1f8b44995bc0dabd3b957e1032c2da26f56fdd. * build kvtag_add_get_scale * comment off free * update code * 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working * do while loop added, tested with 1m object and works * 1m objects test works, 10m object test fail as the original also fails * add new executable to test set * enlarge PDC_SERVER_ID_INTERVAL * update code * update console args * add p search test * add console arg for changing number of attributes per object * free allocated memory * fix query count issue * fix attr length definition * code refactored * code refactored * code refactored * code refactored * code refactored * code refactored * fix data type * fix data type * fix data type * add client side statistics * add client side statistics * fix format * clang formatter * update CMake * update CMake * update CMake * free allocated memory properly * clang format * clang format * clang-format-10 * change file name * address review comments * update llsm importer * update llsm importer * update server checkpoint intervals * update gitignore * adding job scripts * adding one debugging msg * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update container creation to collective mode for debugging purpose * update output for uint64_t * add scripts * update output for uint64_t * update output for uint64_t * update output for uint64_t * update scripts * update scripts * delete debugging message * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * make Cmake to publish scripts directory * update tag names * update tag names * update query startingpos * update query startingpos * update job scripts * add progressive timing for kvtag_add_get_scale * fix iteration count in final report * update job scripts and benckmark program * update message format * update message format * update message format * update message format * clang format * update job scripts * comment off object/container close procedure in benchmark to save node hours * change the max number of object to 1M * change the max length of attribut…
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