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diff --git a/HPC/Antwerpen/Linux/MATLAB/index.html b/HPC/Antwerpen/Linux/MATLAB/index.html
@@ -1244,7 +1244,6 @@ <h2 id="matlab-job-script">MATLAB job script<a class="headerlink" href="#matlab-
 <span class="c1">#PBS -l walltime=1:0:0</span>
 <span class="c1">#</span>
 <span class="c1"># Example (single-core) MATLAB job script</span>
-<span class="c1"># see http://hpcugent.github.io/vsc_user_docs/</span>
 <span class="c1">#</span>
 
 <span class="c1"># make sure the MATLAB version matches with the one used to compile the MATLAB program!</span>

diff --git a/HPC/Antwerpen/Linux/easybuild/index.html b/HPC/Antwerpen/Linux/easybuild/index.html
@@ -1270,9 +1270,10 @@ <h2 id="using-the-installed-modules">Using the installed modules<a class="header
 <p>It makes sense to put this <code>module use</code> command and all <code>export</code>
 commands in your <code>.bashrc</code> login script. That way you don't have to type
 these commands every time you want to use EasyBuild or you want to load
-modules generated with EasyBuild. See also <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
+modules generated with EasyBuild. See also <a href="../linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
 the "Beyond the basics" chapter of the intro to
-Linux</a>.</p>
+Linux</a></p>
+<p>{{ site_url }}</p>
 
 
 

diff --git a/HPC/Antwerpen/Linux/examples/MATLAB/jobscript.sh b/HPC/Antwerpen/Linux/examples/MATLAB/jobscript.sh
@@ -3,7 +3,6 @@
 #PBS -l walltime=1:0:0
 #
 # Example (single-core) MATLAB job script
-# see http://hpcugent.github.io/vsc_user_docs/
 #
 
 # make sure the MATLAB version matches with the one used to compile the MATLAB program!

diff --git a/HPC/Antwerpen/Linux/search/search_index.json b/HPC/Antwerpen/Linux/search/search_index.json
diff --git a/HPC/Antwerpen/Linux/sitemap.xml.gz b/HPC/Antwerpen/Linux/sitemap.xml.gz
diff --git a/HPC/Antwerpen/Linux/troubleshooting/index.html b/HPC/Antwerpen/Linux/troubleshooting/index.html
@@ -1399,7 +1399,7 @@ <h2 id="doswindows-text-format">DOS/Windows text format<a class="headerlink" hre
 </code></pre>
 
 <p>It's probably because you transferred the files from a Windows computer.
-See the <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
+See the <a href="../linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
 <h2 id="warning-message-when-first-connecting-to-new-host">Warning message when first connecting to new host<a class="headerlink" href="#warning-message-when-first-connecting-to-new-host" title="Permanent link">#</a></h2>
 <pre><code><b>ssh [email protected]</b>
 The authenticity of host login.hpc.uantwerpen.be (&lt;IP-adress&gt;) can't be established. 

diff --git a/HPC/Antwerpen/Windows/MATLAB/index.html b/HPC/Antwerpen/Windows/MATLAB/index.html
@@ -1244,7 +1244,6 @@ <h2 id="matlab-job-script">MATLAB job script<a class="headerlink" href="#matlab-
 <span class="c1">#PBS -l walltime=1:0:0</span>
 <span class="c1">#</span>
 <span class="c1"># Example (single-core) MATLAB job script</span>
-<span class="c1"># see http://hpcugent.github.io/vsc_user_docs/</span>
 <span class="c1">#</span>
 
 <span class="c1"># make sure the MATLAB version matches with the one used to compile the MATLAB program!</span>

diff --git a/HPC/Antwerpen/Windows/easybuild/index.html b/HPC/Antwerpen/Windows/easybuild/index.html
@@ -1270,9 +1270,10 @@ <h2 id="using-the-installed-modules">Using the installed modules<a class="header
 <p>It makes sense to put this <code>module use</code> command and all <code>export</code>
 commands in your <code>.bashrc</code> login script. That way you don't have to type
 these commands every time you want to use EasyBuild or you want to load
-modules generated with EasyBuild. See also <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
+modules generated with EasyBuild. See also <a href="../linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
 the "Beyond the basics" chapter of the intro to
-Linux</a>.</p>
+Linux</a></p>
+<p>{{ site_url }}</p>
 
 
 

diff --git a/HPC/Antwerpen/Windows/examples/MATLAB/jobscript.sh b/HPC/Antwerpen/Windows/examples/MATLAB/jobscript.sh
@@ -3,7 +3,6 @@
 #PBS -l walltime=1:0:0
 #
 # Example (single-core) MATLAB job script
-# see http://hpcugent.github.io/vsc_user_docs/
 #
 
 # make sure the MATLAB version matches with the one used to compile the MATLAB program!

diff --git a/HPC/Antwerpen/Windows/search/search_index.json b/HPC/Antwerpen/Windows/search/search_index.json
diff --git a/HPC/Antwerpen/Windows/sitemap.xml.gz b/HPC/Antwerpen/Windows/sitemap.xml.gz
diff --git a/HPC/Antwerpen/Windows/troubleshooting/index.html b/HPC/Antwerpen/Windows/troubleshooting/index.html
@@ -1512,7 +1512,7 @@ <h2 id="doswindows-text-format">DOS/Windows text format<a class="headerlink" hre
 </code></pre>
 
 <p>It's probably because you transferred the files from a Windows computer.
-See the <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
+See the <a href="../linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
 <h2 id="warning-message-when-first-connecting-to-new-host">Warning message when first connecting to new host<a class="headerlink" href="#warning-message-when-first-connecting-to-new-host" title="Permanent link">#</a></h2>
 <p>If it does, type <strong><em>yes</em></strong>. If it doesn't, please contact support: [email protected].</p>
 <p>The first time you make a connection to the login node, a Security

diff --git a/HPC/Antwerpen/macOS/MATLAB/index.html b/HPC/Antwerpen/macOS/MATLAB/index.html
@@ -1244,7 +1244,6 @@ <h2 id="matlab-job-script">MATLAB job script<a class="headerlink" href="#matlab-
 <span class="c1">#PBS -l walltime=1:0:0</span>
 <span class="c1">#</span>
 <span class="c1"># Example (single-core) MATLAB job script</span>
-<span class="c1"># see http://hpcugent.github.io/vsc_user_docs/</span>
 <span class="c1">#</span>
 
 <span class="c1"># make sure the MATLAB version matches with the one used to compile the MATLAB program!</span>

diff --git a/HPC/Antwerpen/macOS/easybuild/index.html b/HPC/Antwerpen/macOS/easybuild/index.html
@@ -1270,9 +1270,10 @@ <h2 id="using-the-installed-modules">Using the installed modules<a class="header
 <p>It makes sense to put this <code>module use</code> command and all <code>export</code>
 commands in your <code>.bashrc</code> login script. That way you don't have to type
 these commands every time you want to use EasyBuild or you want to load
-modules generated with EasyBuild. See also <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
+modules generated with EasyBuild. See also <a href="../linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
 the "Beyond the basics" chapter of the intro to
-Linux</a>.</p>
+Linux</a></p>
+<p>{{ site_url }}</p>
 
 
 

diff --git a/HPC/Antwerpen/macOS/examples/MATLAB/jobscript.sh b/HPC/Antwerpen/macOS/examples/MATLAB/jobscript.sh
@@ -3,7 +3,6 @@
 #PBS -l walltime=1:0:0
 #
 # Example (single-core) MATLAB job script
-# see http://hpcugent.github.io/vsc_user_docs/
 #
 
 # make sure the MATLAB version matches with the one used to compile the MATLAB program!

diff --git a/HPC/Antwerpen/macOS/search/search_index.json b/HPC/Antwerpen/macOS/search/search_index.json
diff --git a/HPC/Antwerpen/macOS/sitemap.xml.gz b/HPC/Antwerpen/macOS/sitemap.xml.gz
diff --git a/HPC/Antwerpen/macOS/troubleshooting/index.html b/HPC/Antwerpen/macOS/troubleshooting/index.html
@@ -1375,7 +1375,7 @@ <h2 id="doswindows-text-format">DOS/Windows text format<a class="headerlink" hre
 </code></pre>
 
 <p>It's probably because you transferred the files from a Windows computer.
-See the <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
+See the <a href="../linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
 <h2 id="warning-message-when-first-connecting-to-new-host">Warning message when first connecting to new host<a class="headerlink" href="#warning-message-when-first-connecting-to-new-host" title="Permanent link">#</a></h2>
 <p>If it does, type <strong><em>yes</em></strong>. If it doesn't, please contact support: [email protected].</p>
 <p>The first time you make a connection to the login node, a Security

diff --git a/HPC/Antwerpen/sitemap.xml.gz b/HPC/Antwerpen/sitemap.xml.gz
diff --git a/HPC/Gent/Linux/MATLAB/index.html b/HPC/Gent/Linux/MATLAB/index.html
@@ -1460,7 +1460,6 @@ <h2 id="matlab-job-script">MATLAB job script<a class="headerlink" href="#matlab-
 <span class="c1">#PBS -l walltime=1:0:0</span>
 <span class="c1">#</span>
 <span class="c1"># Example (single-core) MATLAB job script</span>
-<span class="c1"># see http://hpcugent.github.io/vsc_user_docs/</span>
 <span class="c1">#</span>
 
 <span class="c1"># make sure the MATLAB version matches with the one used to compile the MATLAB program!</span>

diff --git a/HPC/Gent/Linux/easybuild/index.html b/HPC/Gent/Linux/easybuild/index.html
@@ -1482,9 +1482,10 @@ <h2 id="using-the-installed-modules">Using the installed modules<a class="header
 <p>It makes sense to put this <code>module use</code> command and all <code>export</code>
 commands in your <code>.bashrc</code> login script. That way you don't have to type
 these commands every time you want to use EasyBuild or you want to load
-modules generated with EasyBuild. See also <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
+modules generated with EasyBuild. See also <a href="../linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
 the "Beyond the basics" chapter of the intro to
-Linux</a>.</p>
+Linux</a></p>
+<p>{{ site_url }}</p>
 
 
 

diff --git a/HPC/Gent/Linux/examples/MATLAB/jobscript.sh b/HPC/Gent/Linux/examples/MATLAB/jobscript.sh
@@ -3,7 +3,6 @@
 #PBS -l walltime=1:0:0
 #
 # Example (single-core) MATLAB job script
-# see http://hpcugent.github.io/vsc_user_docs/
 #
 
 # make sure the MATLAB version matches with the one used to compile the MATLAB program!

diff --git a/HPC/Gent/Linux/search/search_index.json b/HPC/Gent/Linux/search/search_index.json
diff --git a/HPC/Gent/Linux/sitemap.xml.gz b/HPC/Gent/Linux/sitemap.xml.gz
diff --git a/HPC/Gent/Linux/troubleshooting/index.html b/HPC/Gent/Linux/troubleshooting/index.html
@@ -1683,7 +1683,7 @@ <h2 id="doswindows-text-format">DOS/Windows text format<a class="headerlink" hre
 </code></pre>
 
 <p>It's probably because you transferred the files from a Windows computer.
-See the <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
+See the <a href="../linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
 <h2 id="warning-message-when-first-connecting-to-new-host">Warning message when first connecting to new host<a class="headerlink" href="#warning-message-when-first-connecting-to-new-host" title="Permanent link">#</a></h2>
 <pre><code><b>ssh [email protected]</b>
 The authenticity of host login.hpc.ugent.be (&lt;IP-adress&gt;) can't be established. 

diff --git a/HPC/Gent/Windows/MATLAB/index.html b/HPC/Gent/Windows/MATLAB/index.html
@@ -1460,7 +1460,6 @@ <h2 id="matlab-job-script">MATLAB job script<a class="headerlink" href="#matlab-
 <span class="c1">#PBS -l walltime=1:0:0</span>
 <span class="c1">#</span>
 <span class="c1"># Example (single-core) MATLAB job script</span>
-<span class="c1"># see http://hpcugent.github.io/vsc_user_docs/</span>
 <span class="c1">#</span>
 
 <span class="c1"># make sure the MATLAB version matches with the one used to compile the MATLAB program!</span>

diff --git a/HPC/Gent/Windows/easybuild/index.html b/HPC/Gent/Windows/easybuild/index.html
@@ -1482,9 +1482,10 @@ <h2 id="using-the-installed-modules">Using the installed modules<a class="header
 <p>It makes sense to put this <code>module use</code> command and all <code>export</code>
 commands in your <code>.bashrc</code> login script. That way you don't have to type
 these commands every time you want to use EasyBuild or you want to load
-modules generated with EasyBuild. See also <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
+modules generated with EasyBuild. See also <a href="../linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
 the "Beyond the basics" chapter of the intro to
-Linux</a>.</p>
+Linux</a></p>
+<p>{{ site_url }}</p>
 
 
 

diff --git a/HPC/Gent/Windows/examples/MATLAB/jobscript.sh b/HPC/Gent/Windows/examples/MATLAB/jobscript.sh
@@ -3,7 +3,6 @@
 #PBS -l walltime=1:0:0
 #
 # Example (single-core) MATLAB job script
-# see http://hpcugent.github.io/vsc_user_docs/
 #
 
 # make sure the MATLAB version matches with the one used to compile the MATLAB program!

diff --git a/HPC/Gent/Windows/search/search_index.json b/HPC/Gent/Windows/search/search_index.json
diff --git a/HPC/Gent/Windows/sitemap.xml.gz b/HPC/Gent/Windows/sitemap.xml.gz
diff --git a/HPC/Gent/Windows/troubleshooting/index.html b/HPC/Gent/Windows/troubleshooting/index.html
@@ -1805,7 +1805,7 @@ <h2 id="doswindows-text-format">DOS/Windows text format<a class="headerlink" hre
 </code></pre>
 
 <p>It's probably because you transferred the files from a Windows computer.
-See the <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
+See the <a href="../linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
 <h2 id="warning-message-when-first-connecting-to-new-host">Warning message when first connecting to new host<a class="headerlink" href="#warning-message-when-first-connecting-to-new-host" title="Permanent link">#</a></h2>
 <p>If it does, type <strong><em>yes</em></strong>. If it doesn't, please contact support: [email protected].</p>
 <p>The first time you make a connection to the login node, a Security

diff --git a/HPC/Gent/macOS/MATLAB/index.html b/HPC/Gent/macOS/MATLAB/index.html
@@ -1460,7 +1460,6 @@ <h2 id="matlab-job-script">MATLAB job script<a class="headerlink" href="#matlab-
 <span class="c1">#PBS -l walltime=1:0:0</span>
 <span class="c1">#</span>
 <span class="c1"># Example (single-core) MATLAB job script</span>
-<span class="c1"># see http://hpcugent.github.io/vsc_user_docs/</span>
 <span class="c1">#</span>
 
 <span class="c1"># make sure the MATLAB version matches with the one used to compile the MATLAB program!</span>

diff --git a/HPC/Gent/macOS/easybuild/index.html b/HPC/Gent/macOS/easybuild/index.html
@@ -1482,9 +1482,10 @@ <h2 id="using-the-installed-modules">Using the installed modules<a class="header
 <p>It makes sense to put this <code>module use</code> command and all <code>export</code>
 commands in your <code>.bashrc</code> login script. That way you don't have to type
 these commands every time you want to use EasyBuild or you want to load
-modules generated with EasyBuild. See also <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
+modules generated with EasyBuild. See also <a href="../linux-tutorial/beyond_the_basics/#bashrc-login-script">the section on <code>.bashrc</code> in
 the "Beyond the basics" chapter of the intro to
-Linux</a>.</p>
+Linux</a></p>
+<p>{{ site_url }}</p>
 
 
 

diff --git a/HPC/Gent/macOS/examples/MATLAB/jobscript.sh b/HPC/Gent/macOS/examples/MATLAB/jobscript.sh
@@ -3,7 +3,6 @@
 #PBS -l walltime=1:0:0
 #
 # Example (single-core) MATLAB job script
-# see http://hpcugent.github.io/vsc_user_docs/
 #
 
 # make sure the MATLAB version matches with the one used to compile the MATLAB program!

diff --git a/HPC/Gent/macOS/search/search_index.json b/HPC/Gent/macOS/search/search_index.json
diff --git a/HPC/Gent/macOS/sitemap.xml.gz b/HPC/Gent/macOS/sitemap.xml.gz
diff --git a/HPC/Gent/macOS/troubleshooting/index.html b/HPC/Gent/macOS/troubleshooting/index.html
@@ -1668,7 +1668,7 @@ <h2 id="doswindows-text-format">DOS/Windows text format<a class="headerlink" hre
 </code></pre>
 
 <p>It's probably because you transferred the files from a Windows computer.
-See the <a href="https://hpcugent.github.io/vsc_user_docs/linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
+See the <a href="../linux-tutorial/uploading_files/#dos2unix">section about <code>dos2unix</code> in Linux tutorial</a> to fix this error.</p>
 <h2 id="warning-message-when-first-connecting-to-new-host">Warning message when first connecting to new host<a class="headerlink" href="#warning-message-when-first-connecting-to-new-host" title="Permanent link">#</a></h2>
 <p>If you use X2Go, then you might get another fingerprint, then make sure that the fingerprint
 is displayed is one of the following ones:</p>

diff --git a/HPC/Gent/sitemap.xml.gz b/HPC/Gent/sitemap.xml.gz
diff --git a/linux-tutorial/sitemap.xml.gz b/linux-tutorial/sitemap.xml.gz
diff --git a/pdf/sitemap.xml.gz b/pdf/sitemap.xml.gz