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@ShaokunAn This is largely adapted from https://github.com/ShaokunAn/Spatial-Query/blob/main/examples/SpatialQuery-example.ipynb
(Note: It requires a more recent version of
vitessce
to be installed in workspaces for all of the features to work. I added a spatial-query installation command to the notebook (but not a Vitessce one as I know that is typically installed at the workspace environment level). It currently installs from GitHub, I am not sure if this should be switched to install SpatialQuery from PyPI).I am not sure if the
metadata.json
is correct - we may also want to add more datasets to the list on line 14 - @ShaokunAn do you want to update that list? Currently it includes the one HuBMAP ID from the example notebook linked above.