docker

Collection of dockerfiles with bioinformatic tools used to execute snakemake with singularity.

Run hadolint locally

# ./hadolint.sh PATH_TO_DOCKERFILE
./hadolint.sh common/1.5.1/Dockerfile

Name		Name	Last commit message	Last commit date
Latest commit History 302 Commits
.github		.github
arriba		arriba
automap		automap
bcbio-vc		bcbio-vc
bwa		bwa
cnvkit		cnvkit
cnvpytor		cnvpytor
common		common
conifer		conifer
cramino/v0.14.5		cramino/v0.14.5
crumble		crumble
deepvariant		deepvariant
dysgu		dysgu
exomedepth		exomedepth
expansionhunter		expansionhunter
fastp		fastp
fastqc		fastqc
fgbio/2.1.0		fgbio/2.1.0
freebayes		freebayes
fuseq_wes		fuseq_wes
fusioncatcher		fusioncatcher
gatk4		gatk4
genefuse		genefuse
glnexus		glnexus
hap.py		hap.py
haplocheck		haplocheck
hiphase/v1.4.5		hiphase/v1.4.5
imagemagick		imagemagick
juli/0.1.6.2		juli/0.1.6.2
jumble/jumble_v240830		jumble/jumble_v240830
longtr/v1.1		longtr/v1.1
lra		lra
manta		manta
minimap2		minimap2
mosdepth		mosdepth
msisensor_pro		msisensor_pro
multiqc		multiqc
paraphase/3.0.0		paraphase/3.0.0
pbmarkdup		pbmarkdup
pbmm2		pbmm2
pbsv		pbsv
peddy		peddy
picard		picard
pindel		pindel
prinseq		prinseq
purecn		purecn
reviewer		reviewer
rseqc		rseqc
samtools/v1.21		samtools/v1.21
sawfish		sawfish
scarhrd		scarhrd
sequali/0.12.0		sequali/0.12.0
simple_sv_annotation		simple_sv_annotation
smncopynumbercaller		smncopynumbercaller
sniffles2		sniffles2
snpeff		snpeff
sortmerna		sortmerna
spring		spring
star-fusion		star-fusion
star		star
straglr		straglr
stranger		stranger
strdust/v0.8.2		strdust/v0.8.2
svanna/v1.0.4		svanna/v1.0.4
svdb		svdb
tiddit		tiddit
trgt		trgt
upd		upd
v1.11.3		v1.11.3
varben/1.0		varben/1.0
vardict		vardict
vep		vep
verifybamid2/2.0.1		verifybamid2/2.0.1
vt		vt
whatshap		whatshap
winnowmap		winnowmap
README.md		README.md
hadolint.sh		hadolint.sh
print_version.sh		print_version.sh