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hydra-genetics v0.1.0
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@github-actions github-actions released this 10 Nov 10:13
v0.1.0
981bf09
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Features

  • Add arriba fusion caller (2526e06)
  • add compatibility test (1741fef)
  • added extra parameter (ddd72fe)
  • added fuseq_wes and filtering (3362090)
  • added rule for drawing Arriba fusions (d0267bd)
  • added star-fusion (f8ee474)
  • added threads (d4e8476)
  • ci: add workflow for semantic commits (a654493)
  • ci: pull-request template (a80ddc3)
  • drop conda support and testing (676db90)
  • filter fuseq_wes based on file with fp fusions (c1d9693)
  • fusioncatcher (df02e7b)
  • make config.yaml location more flexible (8cef602)
  • make configfile/confgilefiles argument mandatory (49f6ddb)
  • new arriba version (35ed724)
  • New rule: gene_fuse for DNA-fusions (0405e74)
  • Rule for reporting only true fusions (hardfilter) (15582e9)
  • Rule for reporting only true fusions (hardfilter) (69a20d2)
  • update snakemake version, allow range up to version 8 (1872c52)
  • update snakemake-version (51d2ce9)
  • update snakemake-version (73c8593)

Bug Fixes

  • add missing file used by readthedocs (ad33a78)
  • added .bai file as input to arriba_draw_fusion (14639e1)
  • bugfix same fastq for both mates (1a0445a)
  • change run column name to flowcell in units. (1cfaf7f)
  • container: added env file for fusioncatcher (b0826cf)
  • extra param (f21180d)
  • extra parameter (4f1e30a)
  • fake directory for starfusion dry run (777e3d3)
  • fix path to script (1b0e67c)
  • get on input files (8daaf50)
  • input dir for R (b3b71b4)
  • input dir for R (b53f788)
  • log and benchmark files (aa22e04)
  • make sure that snakemake doesn't remove all output folders (b3b71b4)
  • make sure that snakemake doesn't remove all output folders (9c64d4e)
  • missing comma (864fb97)
  • new config for star_fusion (23bddf2)
  • output dir for R (d5c1375)
  • output file names (7e5eb5a)
  • output file names (1ba8d48)
  • output to file adapted to dicts (f627281)
  • remove output files (f852a2b)
  • remove priority (7433b54)
  • removed unnecessary install of mamba (d10d913)
  • reposition parantheses to include all flags (4ef06c4)
  • set {} as default for config.get (43fe26e)
  • update mkdocs rule plugin version to handle comments in rule (489ef35)
  • update mkdocs_rule_plugin to handle comments (dc17a18)
  • updated requirements (d73d20c)
  • working docker (1d65f97)

Documentation

  • added all rtd for all remaining rules (571f9e1)
  • added rts up until fuseq_wes (ac15d6d)
  • update mkdocs rule plugin (ef6b075)
  • update pycodestyle link (0a7458f)
  • updated README (302d365)
Assets 2
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