feat: change how tmp-dir is specified and remove bqsr #55
Workflow file for this run
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| name: Compatibility test | |
| on: | |
| push: | |
| branches: | |
| - develop | |
| - main | |
| pull_request: | |
| branches: | |
| - develop | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| compatibility-test: | |
| name: Run compatibility test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Get branch names | |
| id: branch-name | |
| uses: tj-actions/[email protected] | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: 3.8 | |
| - name: Install requirements.txt | |
| run: | | |
| pip install -r requirements.txt | |
| - name: Install requirements.test.txt | |
| run: | | |
| pip install -r requirements.test.txt | |
| - name: snakemake dry run | |
| working-directory: .tests/compatibility | |
| run: | | |
| snakemake -n -s Snakefile --configfile config.yaml |