fix: remove extra params.extra in shell

hydra-genetics · Feb 20, 2024 · 9a7d40f · 9a7d40f
1 parent 0525bfc
commit 9a7d40f
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/workflow/rules/pbrun.smk b/workflow/rules/pbrun.smk
@@ -272,7 +272,6 @@ rule pbrun_rna_fq2bam:
         "{rule}: splice-aware alignment with parabricks for {input.fastq}"
     shell:
         "{params.cuda} pbrun rna_fq2bam "
-        "{params.extra} "
         "--genome-lib-dir {input.genome_dir} "
         "--in-fq {params.in_fq} "
         "--num-gpus {params.num_gpus} "