tests: add required machine col to test units file

hydra-genetics · Sep 11, 2024 · 2089cf3 · 2089cf3
1 parent 6dd0b3b
commit 2089cf3
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/.tests/integration/units.tsv b/.tests/integration/units.tsv
@@ -1,3 +1,3 @@
-sample	platform	barcode	type	flowcell	lane	fastq1	fastq2	adapter
-HD832.HES45	Illumina	AAAA+CCCC	T	1	L001	fastq/HD827sonic_testing1_R1.fastq.gz	fastq/HD827sonic_testing1_R2.fastq.gz	ACGT
-HD832.HES45	Illumina	AAAA+TTTT	R	1	L001	fastq/HD827sonic_testing2_R1.fastq.gz	fastq/HD827sonic_testing2_R2.fastq.gz	ACGT
+sample	platform	barcode	type	machine	flowcell	lane	fastq1	fastq2	adapter
+HD832.HES45	Illumina	AAAA+CCCC	T	NDX550220	1	L001	fastq/HD827sonic_testing1_R1.fastq.gz	fastq/HD827sonic_testing1_R2.fastq.gz	ACGT
+HD832.HES45	Illumina	AAAA+TTTT	R	NDX550220	1	L001	fastq/HD827sonic_testing2_R1.fastq.gz	fastq/HD827sonic_testing2_R2.fastq.gz	ACGT
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -40,6 +40,7 @@ validate(units, schema="../schemas/units.schema.yaml")
 
 ### Set wildcard constraints
 
+
 wildcard_constraints:
     sample="|".join(samples.index),
     unit="N|T|R",