Merge pull request #123 from hydra-genetics/padraicc-patch-1

fix(samtools_idxstats): point to correct config
hydra-genetics · Sep 16, 2024 · a5e356d · a5e356d
2 parents 2934c4c + 0737673
commit a5e356d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/samtools.smk b/workflow/rules/samtools.smk
@@ -40,7 +40,7 @@ rule samtools_idxstats:
     output:
         stats=temp("qc/samtools_idxstats/{sample}_{type}.samtools-idxstats.txt"),
     params:
-        extra=config.get("samtools_stats", {}).get("extra", ""),
+        extra=config.get("samtools_idxstats", {}).get("extra", ""),
     log:
         "qc/samtools_idxstats/{sample}_{type}.samtools-idxstats.txt.log",
     benchmark: