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chore: dev to master #119

Merged
merged 22 commits into from
Apr 18, 2024
Merged

chore: dev to master #119

merged 22 commits into from
Apr 18, 2024

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padraicc
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This PR:

(If this is a release PR, no need to add following. Leave this part empty)
(Use the following lines to create a PR text body. Make sure to remove all non-relevant one after you're done)
(Repeat each field as many times as necessary)

Added: for new features.
Changed: for changes in existing functionality.
Deprecated: for soon-to-be removed features.
Removed: for now removed features.
Fixed: for any bug fixes.
Security: in case of vulnerabilities.

Review and tests:

  • Tests pass
  • If you've fixed a bug or added code that should be tested, add tests!
  • Code review
  • CHANGELOG.md is updated
  • New code is executed and covered by tests, and test approve
  • Module compatibility section in README.md is up to date

elleira and others added 22 commits May 3, 2023 15:07
fix: remove conda from picard.smk
feat: update snakemake version, allow range up to version 8
Removed superfluous line
Added software description.
Indentation fixed
ändra formateringen
)

* feat: update samtools.smk and remove design_bed as a default extra

* Update workflow/rules/samtools.smk

Co-authored-by: jonca79 <[email protected]>

* feat: add schemas for samtools rules

* Update rules.schema.yaml

---------

Co-authored-by: jonca79 <[email protected]>
* docs: add files to build rtd and test the build

* docs: update module input files in intro
@padraicc padraicc merged commit 6ae06fd into master Apr 18, 2024
19 checks passed
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5 participants