nextNEOpi_v1.2.1
This release fixes issues encountered when running nextNEOpi with the conda profile (-profile conda)
Main changes:
- work around for incomplete GATK3 conda installation by downloading gatk3.8 jar and running gatk-register
- fix nextNEOpi conda yml file by setting pysam version 0.16
- use separate conda env for IGS
- check for correct conda channels when using conda profile
- reduce the default number of CPUs in
conf/process.config
example - add tag in collectSampleInfo process
- doc: add a note about WGS data to README.md
Thanks to @aneichyk for reporting and testing.