This repository maintains the Nextflow workflow code for Sanger WXS somatic variant calling. The underlying containerized variant calling tools include CaVEMan and Pindle, which are originated from https://github.com/cancerit/dockstore-cgpwxs.
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ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
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ICGC-ARGO Sanger WXS Somatic Variant Calling Workflow
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