3.2.0

• VolumeMounts are now computed and passed to Nextflow so that only the required volumes are mounted in K8s
• Configurable plugins directory to support Nextflow 21+
• Configurable image pull policy for Nextflow pods (defaults to IfNotPresent)
• Adding a thread sleep for NextflowMonitor to improve performance
• Auth removed and AuthDisabled as default given Workflow-API/RabbitMQ integration

Package Updates

• Nextflow to 21.04.3
• Spring Boot to 2.5.4
• Reactor RabbitMQ Streams to 0.9.0
• Clean-up, update, and removal of supporting libs

3.0.0

• Management now comes with optional gatekeeper profile. When turned on, it records runs and determines whether/how runs are allowed to change state.
• Runs are now started or cancelled by passing messages via a RabbitMQ queue
• WES api and GQL for starting and cancelling runs are removed
• Jenkins updated to pass home directory for Docker builds

2.11.0

• Run Request updated to latest WES spec
• WorkflowEngineParams latest param type changed to Boolean, previously String
• Nextflow workflow runs can be scheduled on any namespace (via appConfig), previously it could only use the same namespace as the management service
• Web security added to static paths
• Update java version (openjdk11:jre-11.0.8_10-alpine) in base container to avoid Bugs with K8s >1.17, thanks @bnwlf!
• Update Jenkins to use Github repos

2.8.0

• Nextflow version 20.07.1
• GraphQL mutation exposed, federated in rdpc-gateway thereby allowing 100% GQL interaction with all WES services
• New run profiles:
  • apiKey - injects a kubernetes secret into workflow/process pods that can be access by the workflow (alternate way of providing api-key to running workflows for interacting with SONG/SCORE
  • oauth2Token - will be used for upcoming application tokens mechanism, allowing management to provision tokens on demand for workflows
  • secure | !secure - endpoint (including graphQL) security based on JWT scopes
• Ability to "cancel" runs that have pods in FAILED state that would previously be considered stuck
• Chart version bump for new values
• Refactor of run monitor system

2.1.1

• BUG Fix: toString() on null resume param results in null pointer (Critical)
• New Jenkins steps for better CI/CD

2.1.0

• better error handling for nextflow workflows that do not make it to weblog
• workflow_engine_params and workflow_params are now completely optional (previously required empty object in request)
• workflow_engine_params.resume must be in UUID format or else 400 error will occur
• minor cosmetic tweaks and comments

1.6.0

• adds nextflow runAsUser option to config generation
• refactor config generation for more functional approach with direction from @rtisma
• updates application.yml with more "default appropriate" values
• workflow_params now optional