Small fixes

Signed-off-by: eternal-flame-AD <[email protected]>
igvteam · Jul 14, 2024 · cdcaef8 · cdcaef8
1 parent 56d479e
commit cdcaef8
Show file tree

Hide file tree

Showing 6 changed files with 224 additions and 118 deletions.
diff --git a/demo-no-ncolor-3ce77ba35d.tar.gz b/demo-no-ncolor-3ce77ba35d.tar.gz
diff --git a/embed.html b/embed.html
@@ -1,5 +1,6 @@
 <!DOCTYPE html>
 <html lang="en">
+
 <head>
     <meta charset="utf-8">
     <meta name="viewport" content="width=device-width, initial-scale=1, maximum-scale=1, user-scalable=no">
@@ -11,23 +12,45 @@
 
 <body>
 
-<!-- This page contains an undecorated igv.js instance.  Its purpose is to serve as an iFrame src for embedding igv.js view -->
-
-<div id="igvDiv"/>
-
-<script type="text/javascript">
-
-    document.addEventListener("DOMContentLoaded", function () {
-        var div = document.getElementById('igvDiv');
-        var config = {
-            queryParametersSupported: true
-        };
-        igv.createBrowser(div, config);
-
-    })
-
-</script>
+    <!-- This page contains an undecorated igv.js instance.  Its purpose is to serve as an iFrame src for embedding igv.js view -->
+
+    <div id="igvDiv" />
+
+    <script type="text/javascript">
+
+        document.addEventListener("DOMContentLoaded", function () {
+            var div = document.getElementById('igvDiv');
+            var config = {
+                genome: "hg19",
+                nucleotideColors: {
+                    A: "red",
+                    C: "green",
+                    T: "blue",
+                    G: "yellow",
+                    N: "black"
+                },
+                tracks: [
+                    {
+                        type: "alignment",
+                        format: "bam",
+                        name: "NA12889",
+                        url: "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam",
+                        indexURL: "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai",
+                        sort: {
+                            chr: "chr1",
+                            position: 155155358,
+                            option: "BASE",
+                            direction: "ASC"
+                        }
+                    }
+                ]
+            };
+            igv.createBrowser(div, config);
+
+        })
+
+    </script>
 
 </body>
 
-</html>
+</html>