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add support to load ilastik h5 flavors #305

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@k-dominik k-dominik commented Sep 20, 2023

mostly because I'm annoyed i can not volumina my-result-file.h5/exported_data for quick viewing.

# specify everything
volumina /path/to/myfile.h5/internal/path --axistags zyxc

# if dataset has .dims or .attrs["axistags"] (vigra):
volumina /path/to/myfile.h5/internal/path

# if there's only a single dataset
volumina /path/to/myfile.h5

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codecov bot commented Sep 20, 2023

Codecov Report

Patch has no changes to coverable lines.

Files Changed Coverage
volumina/__main__.py 0.00%

📢 Thoughts on this report? Let us know!.

Comment on lines +157 to +158
print(f"Axistags required for file {args.image} with shape {data.shape}")
return 1
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This will print a message to stderr and exit with code 1.

sys.exit(f"Axistags required ...")

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2 participants