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try to build image with texlive
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iljau committed Jul 28, 2024
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106 changes: 106 additions & 0 deletions .github/workflows/docker-publish.yml
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name: Docker

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.

on:
#schedule:
# - cron: '16 19 * * *'
push:
branches: [ "main" ]
# Publish semver tags as releases.
tags: [ 'v*.*.*' ]
pull_request:
branches: [ "main" ]

env:
# Use docker.io for Docker Hub if empty
REGISTRY: ghcr.io
# github.repository as <account>/<repo>
IMAGE_NAME: ${{ github.repository }}


jobs:
build:

# runs-on: ubuntu-latest
runs-on: ubuntu-24.04
permissions:
contents: read
packages: write
# This is used to complete the identity challenge
# with sigstore/fulcio when running outside of PRs.
id-token: write

steps:
- name: Checkout repository
uses: actions/checkout@v4

- name: Print tool versions
run: |
set -x
pwd
ls
find .
# Install the cosign tool except on PR
# https://github.com/sigstore/cosign-installer
- name: Install cosign
if: github.event_name != 'pull_request'
uses: sigstore/cosign-installer@59acb6260d9c0ba8f4a2f9d9b48431a222b68e20 #v3.5.0
with:
cosign-release: 'v2.2.4'

# Set up BuildKit Docker container builder to be able to build
# multi-platform images and export cache
# https://github.com/docker/setup-buildx-action
- name: Set up Docker Buildx
uses: docker/setup-buildx-action@f95db51fddba0c2d1ec667646a06c2ce06100226 # v3.0.0

# Login against a Docker registry except on PR
# https://github.com/docker/login-action
- name: Log into registry ${{ env.REGISTRY }}
if: github.event_name != 'pull_request'
uses: docker/login-action@343f7c4344506bcbf9b4de18042ae17996df046d # v3.0.0
with:
registry: ${{ env.REGISTRY }}
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}

# Extract metadata (tags, labels) for Docker
# https://github.com/docker/metadata-action
- name: Extract Docker metadata
id: meta
uses: docker/metadata-action@96383f45573cb7f253c731d3b3ab81c87ef81934 # v5.0.0
with:
images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}

# Build and push Docker image with Buildx (don't push on PR)
# https://github.com/docker/build-push-action
- name: Build and push Docker image
id: build-and-push
uses: docker/build-push-action@0565240e2d4ab88bba5387d719585280857ece09 # v5.0.0
with:
context: .
push: ${{ github.event_name != 'pull_request' }}
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
cache-from: type=gha
cache-to: type=gha,mode=max

# Sign the resulting Docker image digest except on PRs.
# This will only write to the public Rekor transparency log when the Docker
# repository is public to avoid leaking data. If you would like to publish
# transparency data even for private images, pass --force to cosign below.
# https://github.com/sigstore/cosign
- name: Sign the published Docker image
if: ${{ github.event_name != 'pull_request' }}
env:
# https://docs.github.com/en/actions/security-guides/security-hardening-for-github-actions#using-an-intermediate-environment-variable
TAGS: ${{ steps.meta.outputs.tags }}
DIGEST: ${{ steps.build-and-push.outputs.digest }}
# This step uses the identity token to provision an ephemeral certificate
# against the sigstore community Fulcio instance.
run: echo "${TAGS}" | xargs -I {} cosign sign --yes {}@${DIGEST}
108 changes: 108 additions & 0 deletions Dockerfile
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FROM ubuntu:24.04

ENV LANG=C.UTF-8
ENV LC_ALL=C.UTF-8
ENV DEBIAN_FRONTEND=noninteractive
ENV PYTHONUNBUFFERED=1
ENV PYTHONDONTWRITEBYTECODE=1
ENV MAMBA_NO_BANNER=1

ARG MINIFORGE_VERSION="24.3.0-0"

# base packages
RUN apt-get update && apt-get install --no-install-recommends -y \
tini \
gosu \
curl \
ca-certificates \
tar \
unzip \
gzip \
time \
htop \
less \
lsof \
strace \
procps \
neovim \
micro \
ninja-build \
texlive-latex-base \
texlive-latex-extra \
texlive-fonts-extra \
&& echo "apt-get done" \
# && rm -rf /var/lib/apt/lists/* \
;


# create base conda environment using mambaforge
RUN set -x && \
pwd && \
MINIFORGE_FILENAME="Mambaforge-$(uname)-$(uname -m).sh" && \
MINIFORGE_DOWNLOAD_URL="https://github.com/conda-forge/miniforge/releases/download/${MINIFORGE_VERSION}/${MINIFORGE_FILENAME}" && \
curl -L -o "Miniforge3.sh" "$MINIFORGE_DOWNLOAD_URL" && \
bash "./Miniforge3.sh" -b -p /opt/mambaforge && \
/opt/mambaforge/bin/python --version && \
/opt/mambaforge/condabin/mamba clean --all && \
rm "./Miniforge3.sh" && \
echo "done";


# add base conda utils to path
ENV PATH="/opt/mambaforge/condabin:$PATH"

RUN set -x && \
conda config --file /opt/mambaforge/.condarc --add envs_dirs /opt/envs;

RUN set -x && \
mamba install conda-tree -n base && \
mamba clean --all && \
echo "done";

##

RUN mkdir /app-build
RUN mkdir /app

##

COPY environment.yml /app-build
#COPY environment-pinned-linux.yml /app-build/environment.yml

# create new conda environment named "main"
RUN set -x && \
mamba env create -n main --file=/app-build/environment.yml && \
/opt/envs/main/bin/python --version && \
mamba clean --all && \
echo "done";

RUN set -x && \
conda env export -n main && \
echo "done";




# "activate" "main" conda environment
ENV CONDA_PREFIX="/opt/envs/main"
ENV PATH="$CONDA_PREFIX/bin:$PATH"


RUN set -x && \
conda env export -n main > /app-build/environment-final.yml && \
cat /app-build/environment-final.yml && \
echo "done";

RUN set -x && \
/opt/mambaforge/bin/conda-tree -n main deptree --small > /app-build/deptree.txt && \
cat /app-build/deptree.txt && \
echo "done";

WORKDIR /app
COPY . /app

ENTRYPOINT ["tini", "-g", "--"]

#CMD ["/bin/bash"]
CMD ["bash"]
#CMD ["/app/run_app.sh"]
16 changes: 16 additions & 0 deletions environment.yml
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channels:
- conda-forge
dependencies:
- python=3.12
- fastapi
- uvicorn
- sqlalchemy
- zstandard
- zstd
- jinja2
- tabulate
- importlib_resources
- click
- libblas=*=*openblas
# linux-only
- _openmp_mutex=*=*_llvm

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