Update create_result_vcf.py

Additional bugfix
imgag · Mar 2, 2021 · dd76c81 · dd76c81
1 parent 6161e42
commit dd76c81
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/aidiva/helper_modules/create_result_vcf.py b/aidiva/helper_modules/create_result_vcf.py
@@ -8,8 +8,11 @@ def write_header(out_file, single):
     if not single:
         out_file.write("##INFO=<ID=AIDIVA,Number=4,Type=String,Description=\"AIdiva scores: AIdiva-score,AIdiva-final-score,AIdiva-hpo-relatedness,AIdiva-hpo-relatedness-interacting,AIdiva-filter. (AIdiva-score is the pathogenicity prediction from the random forest; AIdiva-final-score is the predction finalized with the given HPO terms; AIdiva-hpo-relatedness indicates how strong the currrent variant is associated with the given HPO terms; AIdiva-filter 0 or 1 wether all internal filters were passed or not)\">\n")
         out_file.write("##INFO=<ID=AIDIVA_INHERITANCE,Number=4,Type=String,Description=\"AIdiva inheritance flags: dominant,denovo,recessive,xlinked,compound. (Each value can be 0 or 1)\">\n")
+        out_file.write("##INFO=<ID=AIDIVA_INHERITANCE_COMMENT,Number=1,Type=String,Description=\"AIdiva inheritance flags (dominant,denovo,recessive,xlinked,compound) in written form\">\n")
     else:
         out_file.write("##INFO=<ID=AIDIVA,Number=4,Type=String,Description=\"AIdiva scores: AIdiva-score,AIdiva-final-score,AIdiva-hpo-relatedness,AIdiva-hpo-relatedness-interacting,AIdiva-filter. (AIdiva-score is the pathogenicity prediction from the random forest; AIdiva-final-score is the predction finalized with the given HPO terms; AIdiva-hpo-relatedness indicates how strong the currrent variant is associated with the given HPO terms; AIdiva-filter 0 or 1 wether all internal filters were passed or not)\">\n")
+        out_file.write("##INFO=<ID=AIDIVA_INHERITANCE,Number=2,Type=String,Description=\"AIdiva inheritance flags: recessive,compound. (Each value can be 0 or 1)\">\n")
+        out_file.write("##INFO=<ID=AIDIVA_INHERITANCE_COMMENT,Number=1,Type=String,Description=\"AIdiva inheritance flags (recessive,compound) in written form\">\n")
 
     out_file.write("##contig=<ID=chr1,length=249250621,assembly=hg19>\n")
     out_file.write("##contig=<ID=chr2,length=243199373,assembly=hg19>\n")