Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Rake task to update new fields for existing batches #1958

Merged
merged 2 commits into from
Jul 7, 2023
Merged

Rake task to update new fields for existing batches #1958

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
87a592f
Rake task to update new fields for existing batches
leandroradusky Jul 4, 2023
768c91e
Delete public file with the new fields to upload it manually
leandroradusky Jul 7, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
19 changes: 19 additions & 0 deletions lib/tasks/batches_labels.rake
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
require 'csv'

namespace :batches_labels do
desc "Update batches label fields"
task :import, [:csv_file] => :environment do |task, args|
path = args[:csv_file] || abort("Usage: $> rake batches_labels:import[path/to/file.csv] RAILS_ENV={env}")

CSV.foreach(path, headers: true) do |row|
batch = Batch.find_by(batch_number: row['batch_number'])
if batch
batch.reference_gene = row['reference_gene']
batch.target_organism_taxonomy_id = row['target_organism_taxonomy_id']
batch.pango_lineage = row['pango_lineage']
batch.who_label = row['who_label']
batch.save
end
end
end
end