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Merge pull request #37 from ivadomed/um/remove_task_arg
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Removed comments for args for task and centerline
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uzaymacar authored Jan 24, 2022
2 parents c5625a8 + cf9f07f commit 0dccf78
Showing 1 changed file with 1 addition and 3 deletions.
4 changes: 1 addition & 3 deletions preprocessing/preprocess_data.sh
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Expand Up @@ -6,11 +6,9 @@
# - SCT (5.4.0)
#
# Usage:
# ./preprocess_data.sh <SUBJECT> <CENTERLINE_METHOD> <TASK>
# ./preprocess_data.sh <SUBJECT>
#
# <SUBJECT> is the name of the subject in BIDS convention (sub-XXX)
# <CENTERLINE_METHOD> is the method sct_deepseg_sc uses for centerline extraction (cnn or svm)
# <TASK> is the aimed training task which will guide preprocessing (scseg or lesionseg)
#
# Manual segmentations or labels should be located under:
# PATH_DATA/derivatives/labels/SUBJECT/<CONTRAST>/
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