Retrieve regions with coverage above threshould between two different experiments
Requirements:
- python v2.7
- pandas v0.20
- numpy v1.13
usage:
python CovDetect.py [-h] [-bp BASEPAIRS] [-stdv STANDEV] input
positional arguments:
- input
Input File
optional arguments:
- -h, --help
Show help message and exit
- -bp BASEPAIRS, --basepairs BASEPAIRS
Determine base pairs for sliding bases
- -stdv STANDEV, --standev STANDEV
Number of standard deviations used to select the bases