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CovDetect

B blocks detection tool

Retrieve regions with coverage above threshould between two different experiments

Requirements:

  • python v2.7
  • pandas v0.20
  • numpy v1.13

usage:

python CovDetect.py [-h] [-bp BASEPAIRS] [-stdv STANDEV] input

positional arguments:

  • input

Input File

optional arguments:

  • -h, --help

Show help message and exit

  • -bp BASEPAIRS, --basepairs BASEPAIRS

Determine base pairs for sliding bases

  • -stdv STANDEV, --standev STANDEV

Number of standard deviations used to select the bases

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B blocks detection tool

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