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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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| MN908947.3 30 54 nCoV-2019_1_LEFT nCoV-2019_1 + | ||
| MN908947.3 2057 2079 nCoV-2019_1_RIGHT nCoV-2019_1 - | ||
| MN908947.3 1925 1947 nCoV-2019_2_LEFT nCoV-2019_2 + | ||
| MN908947.3 3714 3737 nCoV-2019_2_RIGHT nCoV-2019_2 - | ||
| MN908947.3 3580 3603 nCoV-2019_3_LEFT nCoV-2019_1 + | ||
| MN908947.3 5526 5548 nCoV-2019_3_RIGHT nCoV-2019_1 - | ||
| MN908947.3 5394 5419 nCoV-2019_4_LEFT nCoV-2019_2 + | ||
| MN908947.3 7233 7255 nCoV-2019_4_RIGHT nCoV-2019_2 - | ||
| MN908947.3 7092 7117 nCoV-2019_5_LEFT nCoV-2019_1 + | ||
| MN908947.3 9101 9123 nCoV-2019_5_RIGHT nCoV-2019_1 - | ||
| MN908947.3 8976 9000 nCoV-2019_6_LEFT nCoV-2019_2 + | ||
| MN908947.3 10815 10837 nCoV-2019_6_RIGHT nCoV-2019_2 - | ||
| MN908947.3 10676 10701 nCoV-2019_7_LEFT nCoV-2019_1 + | ||
| MN908947.3 12657 12679 nCoV-2019_7_RIGHT nCoV-2019_1 - | ||
| MN908947.3 12519 12546 nCoV-2019_8_LEFT nCoV-2019_2 + | ||
| MN908947.3 14306 14328 nCoV-2019_8_RIGHT nCoV-2019_2 - | ||
| MN908947.3 14176 14198 nCoV-2019_9_LEFT nCoV-2019_1 + | ||
| MN908947.3 15956 15978 nCoV-2019_9_RIGHT nCoV-2019_1 - | ||
| MN908947.3 15827 15851 nCoV-2019_10_LEFT nCoV-2019_2 + | ||
| MN908947.3 17732 17754 nCoV-2019_10_RIGHT nCoV-2019_2 - | ||
| MN908947.3 17571 17595 nCoV-2019_11_LEFT nCoV-2019_1 + | ||
| MN908947.3 19463 19485 nCoV-2019_11_RIGHT nCoV-2019_1 - | ||
| MN908947.3 19310 19332 nCoV-2019_12_LEFT nCoV-2019_2 + | ||
| MN908947.3 21219 21241 nCoV-2019_12_RIGHT nCoV-2019_2 - | ||
| MN908947.3 21075 21104 nCoV-2019_13_LEFT nCoV-2019_1 + | ||
| MN908947.3 22974 22996 nCoV-2019_13_RIGHT nCoV-2019_1 - | ||
| MN908947.3 22850 22872 nCoV-2019_14_LEFT nCoV-2019_2 + | ||
| MN908947.3 24790 24812 nCoV-2019_14_RIGHT nCoV-2019_2 - | ||
| MN908947.3 24649 24674 nCoV-2019_15_LEFT nCoV-2019_1 + | ||
| MN908947.3 26520 26542 nCoV-2019_15_RIGHT nCoV-2019_1 - | ||
| MN908947.3 26386 26413 nCoV-2019_16_LEFT nCoV-2019_2 + | ||
| MN908947.3 28329 28351 nCoV-2019_16_RIGHT nCoV-2019_2 - | ||
| MN908947.3 27914 27938 nCoV-2019_17_LEFT nCoV-2019_1 + | ||
| MN908947.3 29768 29790 nCoV-2019_17_RIGHT nCoV-2019_1 - |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| MN908947.3 30 54 nCoV-2019_1_LEFT 1 + | ||
| MN908947.3 2057 2079 nCoV-2019_1_RIGHT 1 - | ||
| MN908947.3 1925 1947 nCoV-2019_2_LEFT 2 + | ||
| MN908947.3 3714 3737 nCoV-2019_2_RIGHT 2 - | ||
| MN908947.3 3580 3603 nCoV-2019_3_LEFT 1 + | ||
| MN908947.3 5526 5548 nCoV-2019_3_RIGHT 1 - | ||
| MN908947.3 5394 5419 nCoV-2019_4_LEFT 2 + | ||
| MN908947.3 7233 7255 nCoV-2019_4_RIGHT 2 - | ||
| MN908947.3 7092 7117 nCoV-2019_5_LEFT 1 + | ||
| MN908947.3 9101 9123 nCoV-2019_5_RIGHT 1 - | ||
| MN908947.3 8976 9000 nCoV-2019_6_LEFT 2 + | ||
| MN908947.3 10815 10837 nCoV-2019_6_RIGHT 2 - | ||
| MN908947.3 10676 10701 nCoV-2019_7_LEFT 1 + | ||
| MN908947.3 12657 12679 nCoV-2019_7_RIGHT 1 - | ||
| MN908947.3 12519 12546 nCoV-2019_8_LEFT 2 + | ||
| MN908947.3 14306 14328 nCoV-2019_8_RIGHT 2 - | ||
| MN908947.3 14176 14198 nCoV-2019_9_LEFT 1 + | ||
| MN908947.3 15956 15978 nCoV-2019_9_RIGHT 1 - | ||
| MN908947.3 15827 15851 nCoV-2019_10_LEFT 2 + | ||
| MN908947.3 17732 17754 nCoV-2019_10_RIGHT 2 - | ||
| MN908947.3 17571 17595 nCoV-2019_11_LEFT 1 + | ||
| MN908947.3 19463 19485 nCoV-2019_11_RIGHT 1 - | ||
| MN908947.3 19310 19332 nCoV-2019_12_LEFT 2 + | ||
| MN908947.3 21219 21241 nCoV-2019_12_RIGHT 2 - | ||
| MN908947.3 21075 21104 nCoV-2019_13_LEFT 1 + | ||
| MN908947.3 22974 22996 nCoV-2019_13_RIGHT 1 - | ||
| MN908947.3 22850 22872 nCoV-2019_14_LEFT 2 + | ||
| MN908947.3 24790 24812 nCoV-2019_14_RIGHT 2 - | ||
| MN908947.3 24649 24674 nCoV-2019_15_LEFT 1 + | ||
| MN908947.3 26520 26542 nCoV-2019_15_RIGHT 1 - | ||
| MN908947.3 26386 26413 nCoV-2019_16_LEFT 2 + | ||
| MN908947.3 28329 28351 nCoV-2019_16_RIGHT 2 - | ||
| MN908947.3 27914 27938 nCoV-2019_17_LEFT 1 + | ||
| MN908947.3 29768 29790 nCoV-2019_17_RIGHT 1 - |
500 changes: 500 additions & 0 deletions
500
resources/primer_schemes/2kb_resende/nCoV-2019.reference.fasta
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1 change: 1 addition & 0 deletions
1
resources/primer_schemes/2kb_resende/nCoV-2019.reference.fasta.fai
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| MN908947.3 29903 12 60 61 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| MN908947.3 30 54 hCoV_1_LEFT nCoV-2019_1 | ||
| MN908947.3 2057 2079 hCoV_1_RIGHT nCoV-2019_1 | ||
| MN908947.3 1925 1947 hCoV_2_LEFT nCoV-2019_2 | ||
| MN908947.3 3714 3737 hCoV_2_RIGHT nCoV-2019_2 | ||
| MN908947.3 3580 3603 hCoV_3_LEFT nCoV-2019_1 | ||
| MN908947.3 5526 5548 hCoV_3_RIGHT nCoV-2019_1 | ||
| MN908947.3 5394 5419 hCoV_4_LEFT nCoV-2019_2 | ||
| MN908947.3 7233 7255 hCoV_4_RIGHT nCoV-2019_2 | ||
| MN908947.3 7092 7117 hCoV_5_LEFT nCoV-2019_1 | ||
| MN908947.3 9101 9123 hCoV_5_RIGHT nCoV-2019_1 | ||
| MN908947.3 8976 9000 hCoV_6_LEFT nCoV-2019_2 | ||
| MN908947.3 10815 10837 hCoV_6_RIGHT nCoV-2019_2 | ||
| MN908947.3 10676 10701 hCoV_7_LEFT nCoV-2019_1 | ||
| MN908947.3 12657 12679 hCoV_7_RIGHT nCoV-2019_1 | ||
| MN908947.3 12519 12546 hCoV_8_LEFT nCoV-2019_2 | ||
| MN908947.3 14306 14328 hCoV_8_RIGHT nCoV-2019_2 | ||
| MN908947.3 14176 14198 hCoV_9_LEFT nCoV-2019_1 | ||
| MN908947.3 15956 15978 hCoV_9_RIGHT nCoV-2019_1 | ||
| MN908947.3 15827 15851 hCoV_10_LEFT nCoV-2019_2 | ||
| MN908947.3 17732 17754 hCoV_10_RIGHT nCoV-2019_2 | ||
| MN908947.3 17571 17595 hCoV_11_LEFT nCoV-2019_1 | ||
| MN908947.3 19463 19485 hCoV_11_RIGHT nCoV-2019_1 | ||
| MN908947.3 19310 19332 hCoV_12_LEFT nCoV-2019_2 | ||
| MN908947.3 21219 21241 hCoV_12_RIGHT nCoV-2019_2 | ||
| MN908947.3 21075 21104 hCoV_13_LEFT nCoV-2019_1 | ||
| MN908947.3 22974 22996 hCoV_13_RIGHT nCoV-2019_1 | ||
| MN908947.3 22850 22872 hCoV_14_LEFT nCoV-2019_2 | ||
| MN908947.3 24790 24812 hCoV_14_RIGHT nCoV-2019_2 | ||
| MN908947.3 24649 24674 hCoV_15_LEFT nCoV-2019_1 | ||
| MN908947.3 26520 26542 hCoV_15_RIGHT nCoV-2019_1 | ||
| MN908947.3 26386 26413 hCoV_16_LEFT nCoV-2019_2 | ||
| MN908947.3 28329 28351 hCoV_16_RIGHT nCoV-2019_2 | ||
| MN908947.3 27914 27938 hCoV_17_LEFT nCoV-2019_1 | ||
| MN908947.3 29768 29790 hCoV_17_RIGHT nCoV-2019_1 |
17 changes: 17 additions & 0 deletions
17
resources/primer_schemes/2kb_resende/ncov-qc_resende.scheme.bed
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,17 @@ | ||
| MN908947.3 54 2057 1 nCoV-2019_1 + | ||
| MN908947.3 1947 3714 2 nCoV-2019_2 + | ||
| MN908947.3 3603 5526 3 nCoV-2019_1 + | ||
| MN908947.3 5419 7233 4 nCoV-2019_2 + | ||
| MN908947.3 7117 9101 5 nCoV-2019_1 + | ||
| MN908947.3 9000 10815 6 nCoV-2019_2 + | ||
| MN908947.3 10701 12657 7 nCoV-2019_1 + | ||
| MN908947.3 12546 14306 8 nCoV-2019_2 + | ||
| MN908947.3 14198 15956 9 nCoV-2019_1 + | ||
| MN908947.3 15851 17732 10 nCoV-2019_2 + | ||
| MN908947.3 17595 19463 11 nCoV-2019_1 + | ||
| MN908947.3 19332 21219 12 nCoV-2019_2 + | ||
| MN908947.3 21104 22974 13 nCoV-2019_1 + | ||
| MN908947.3 22872 24790 14 nCoV-2019_2 + | ||
| MN908947.3 24674 26520 15 nCoV-2019_1 + | ||
| MN908947.3 26413 28329 16 nCoV-2019_2 + | ||
| MN908947.3 27938 29768 17 nCoV-2019_1 + |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| (hCoV_F1_2kb) ACCAACCAACTTTCGATCTCTTGT | ||
| (hCoV_R1_2kb) ACACCACCTGTAATGTAGGCCA | ||
| (hCoV_F3_2kb) AGCGGACACAATCTTGCTAAACA | ||
| (hCoV_R3_2kb) GGTTGTCTGCTGTTGTCCACAA | ||
| (hCoV_F5_2kb) CACTATTGCAACCTACTGTACTGGT | ||
| (hCoV_R5_2kb) CGTGTGTCAGGGCGTAAACTTT | ||
| (hCoV_F7_2kb) TGTACGCTGCTGTTATAAATGGAGA | ||
| (hCoV_R7_2kb) TTTGACAGCAGAATTGGCCCTT | ||
| (hCoV_F9_2kb) CCTTGACCAGGGCTTTAACTGC | ||
| (hCoV_R9_2kb) ATCATCTACAAAACAGCCGGCC | ||
| (hCoV_F11_2kb) GCTGAAATTGTTGACACTGTGAGT | ||
| (hCoV_R11_2kb) AGCACCACCTAAATTGCAACGT | ||
| (hCoV_F13_2kb) ACAAAAGAAAATGACTCTAAAGAGGGTTT | ||
| (hCoV_R13_2kb) TGTGCTACCGGCCTGATAGATT | ||
| (hCoV_F15_2kb) TCAGAGTGTGTACTTGGACAATCAA | ||
| (hCoV_R15_2kb) GTACCGTTGGAATCTGCCATGG | ||
| (hCoV_F17_2kb) GGAATCATCACAACTGTAGCTGCA | ||
| (hCoV_R17_2kb) TAGGCAGCTCTCCCTAGCATTG | ||
| (hCoV_F2_2kb) CTGCTCAAAATTCTGTGCGTGT | ||
| (hCoV_R2_2kb) GGTCAGCACCAAAAATACCAGCT | ||
| (hCoV_F4_2kb) TTGTGCACTTATCTTAGCCTACTGT | ||
| (hCoV_R4_2kb) TGCCAAAAACCACTCTGCAACT | ||
| (hCoV_F6_2kb) GTACACTGACTTTGCAACATCAGC | ||
| (hCoV_R6_2kb) AACGGCAATTCCAGTTTGAGCA | ||
| (hCoV_F8_2kb) TGGTACAACATTTACTTATGCATCAGC | ||
| (hCoV_R8_2kb) TGGGTGGTATGTCTGATCCCAA | ||
| (hCoV_F10_2kb) AGCAAAATGTTGGACTGAGACTGA | ||
| (hCoV_R10_2kb) CCAAGCAGGGTTACGTGTAAGG | ||
| (hCoV_F12_2kb) TGCATTCCACACACCAGCTTTT | ||
| (hCoV_R12_2kb) TAACAAAGGCTGTCCACCATGC | ||
| (hCoV_F14_2kb) CAGGCTGCGTTATAGCTTGGAA | ||
| (hCoV_R14_2kb) CATGACAAATGGCAGGAGCAGT | ||
| (hCoV_F16_2kb) ACGTGAGTCTTGTAAAACCTTCTTTTT | ||
| (hCoV_R16_2kb) ACTGCCAGTTGAATCTGAGGGT |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,34 +1,34 @@ | ||
| MN908947.3 30 54 nCoV-2019_1_LEFT nCoV-2019_1 + | ||
| MN908947.3 2057 2079 nCoV-2019_1_RIGHT nCoV-2019_1 - | ||
| MN908947.3 3580 3603 nCoV-2019_3_LEFT nCoV-2019_1 + | ||
| MN908947.3 5526 5548 nCoV-2019_3_RIGHT nCoV-2019_1 - | ||
| MN908947.3 7092 7117 nCoV-2019_5_LEFT nCoV-2019_1 + | ||
| MN908947.3 9101 9123 nCoV-2019_5_RIGHT nCoV-2019_1 - | ||
| MN908947.3 10676 10701 nCoV-2019_7_LEFT nCoV-2019_1 + | ||
| MN908947.3 12657 12679 nCoV-2019_7_RIGHT nCoV-2019_1 - | ||
| MN908947.3 14176 14198 nCoV-2019_9_LEFT nCoV-2019_1 + | ||
| MN908947.3 15956 15978 nCoV-2019_9_RIGHT nCoV-2019_1 - | ||
| MN908947.3 17571 17595 nCoV-2019_11_LEFT nCoV-2019_1 + | ||
| MN908947.3 19463 19485 nCoV-2019_11_RIGHT nCoV-2019_1 - | ||
| MN908947.3 21075 21104 nCoV-2019_13_LEFT nCoV-2019_1 + | ||
| MN908947.3 22974 22996 nCoV-2019_13_RIGHT nCoV-2019_1 - | ||
| MN908947.3 24649 24674 nCoV-2019_15_LEFT nCoV-2019_1 + | ||
| MN908947.3 26520 26542 nCoV-2019_15_RIGHT nCoV-2019_1 - | ||
| MN908947.3 27914 27938 nCoV-2019_17_LEFT nCoV-2019_1 + | ||
| MN908947.3 29768 29790 nCoV-2019_17_RIGHT nCoV-2019_1 - | ||
| MN908947.3 1916 1942 nCoV-2019_2_LEFT nCoV-2019_2 + | ||
| MN908947.3 3714 3737 nCoV-2019_2_RIGHT nCoV-2019_2 - | ||
| MN908947.3 3580 3603 nCoV-2019_3_LEFT nCoV-2019_1 + | ||
| MN908947.3 5526 5548 nCoV-2019_3_RIGHT nCoV-2019_1 - | ||
| MN908947.3 5394 5419 nCoV-2019_4_LEFT nCoV-2019_2 + | ||
| MN908947.3 7233 7255 nCoV-2019_4_RIGHT nCoV-2019_2 - | ||
| MN908947.3 7092 7117 nCoV-2019_5_LEFT nCoV-2019_1 + | ||
| MN908947.3 9101 9123 nCoV-2019_5_RIGHT nCoV-2019_1 - | ||
| MN908947.3 8976 9000 nCoV-2019_6_LEFT nCoV-2019_2 + | ||
| MN908947.3 10815 10837 nCoV-2019_6_RIGHT nCoV-2019_2 - | ||
| MN908947.3 10676 10701 nCoV-2019_7_LEFT nCoV-2019_1 + | ||
| MN908947.3 12657 12679 nCoV-2019_7_RIGHT nCoV-2019_1 - | ||
| MN908947.3 12519 12546 nCoV-2019_8_LEFT nCoV-2019_2 + | ||
| MN908947.3 14306 14328 nCoV-2019_8_RIGHT nCoV-2019_2 - | ||
| MN908947.3 14176 14198 nCoV-2019_9_LEFT nCoV-2019_1 + | ||
| MN908947.3 15956 15978 nCoV-2019_9_RIGHT nCoV-2019_1 - | ||
| MN908947.3 15827 15851 nCoV-2019_10_LEFT nCoV-2019_2 + | ||
| MN908947.3 17732 17754 nCoV-2019_10_RIGHT nCoV-2019_2 - | ||
| MN908947.3 17571 17595 nCoV-2019_11_LEFT nCoV-2019_1 + | ||
| MN908947.3 19463 19485 nCoV-2019_11_RIGHT nCoV-2019_1 - | ||
| MN908947.3 19310 19332 nCoV-2019_12_LEFT nCoV-2019_2 + | ||
| MN908947.3 21219 21241 nCoV-2019_12_RIGHT nCoV-2019_2 - | ||
| MN908947.3 21075 21104 nCoV-2019_13_LEFT nCoV-2019_1 + | ||
| MN908947.3 22974 22996 nCoV-2019_13_RIGHT nCoV-2019_1 - | ||
| MN908947.3 22850 22872 nCoV-2019_14_LEFT nCoV-2019_2 + | ||
| MN908947.3 24790 24812 nCoV-2019_14_RIGHT nCoV-2019_2 - | ||
| MN908947.3 24649 24674 nCoV-2019_15_LEFT nCoV-2019_1 + | ||
| MN908947.3 26520 26542 nCoV-2019_15_RIGHT nCoV-2019_1 - | ||
| MN908947.3 26386 26413 nCoV-2019_16_LEFT nCoV-2019_2 + | ||
| MN908947.3 28329 28351 nCoV-2019_16_RIGHT nCoV-2019_2 - | ||
| MN908947.3 27914 27938 nCoV-2019_17_LEFT nCoV-2019_1 + | ||
| MN908947.3 29768 29790 nCoV-2019_17_RIGHT nCoV-2019_1 - |
32 changes: 16 additions & 16 deletions
32
resources/primer_schemes/2kb_resende_v2/nCoV-2019.primer.bed
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,34 +1,34 @@ | ||
| MN908947.3 30 54 nCoV-2019_1_LEFT 1 + | ||
| MN908947.3 2057 2079 nCoV-2019_1_RIGHT 1 - | ||
| MN908947.3 3580 3603 nCoV-2019_3_LEFT 1 + | ||
| MN908947.3 5526 5548 nCoV-2019_3_RIGHT 1 - | ||
| MN908947.3 7092 7117 nCoV-2019_5_LEFT 1 + | ||
| MN908947.3 9101 9123 nCoV-2019_5_RIGHT 1 - | ||
| MN908947.3 10676 10701 nCoV-2019_7_LEFT 1 + | ||
| MN908947.3 12657 12679 nCoV-2019_7_RIGHT 1 - | ||
| MN908947.3 14176 14198 nCoV-2019_9_LEFT 1 + | ||
| MN908947.3 15956 15978 nCoV-2019_9_RIGHT 1 - | ||
| MN908947.3 17571 17595 nCoV-2019_11_LEFT 1 + | ||
| MN908947.3 19463 19485 nCoV-2019_11_RIGHT 1 - | ||
| MN908947.3 21075 21104 nCoV-2019_13_LEFT 1 + | ||
| MN908947.3 22974 22996 nCoV-2019_13_RIGHT 1 - | ||
| MN908947.3 24649 24674 nCoV-2019_15_LEFT 1 + | ||
| MN908947.3 26520 26542 nCoV-2019_15_RIGHT 1 - | ||
| MN908947.3 27914 27938 nCoV-2019_17_LEFT 1 + | ||
| MN908947.3 29768 29790 nCoV-2019_17_RIGHT 1 - | ||
| MN908947.3 1916 1942 nCoV-2019_2_LEFT 2 + | ||
| MN908947.3 3714 3737 nCoV-2019_2_RIGHT 2 - | ||
| MN908947.3 3580 3603 nCoV-2019_3_LEFT 1 + | ||
| MN908947.3 5526 5548 nCoV-2019_3_RIGHT 1 - | ||
| MN908947.3 5394 5419 nCoV-2019_4_LEFT 2 + | ||
| MN908947.3 7233 7255 nCoV-2019_4_RIGHT 2 - | ||
| MN908947.3 7092 7117 nCoV-2019_5_LEFT 1 + | ||
| MN908947.3 9101 9123 nCoV-2019_5_RIGHT 1 - | ||
| MN908947.3 8976 9000 nCoV-2019_6_LEFT 2 + | ||
| MN908947.3 10815 10837 nCoV-2019_6_RIGHT 2 - | ||
| MN908947.3 10676 10701 nCoV-2019_7_LEFT 1 + | ||
| MN908947.3 12657 12679 nCoV-2019_7_RIGHT 1 - | ||
| MN908947.3 12519 12546 nCoV-2019_8_LEFT 2 + | ||
| MN908947.3 14306 14328 nCoV-2019_8_RIGHT 2 - | ||
| MN908947.3 14176 14198 nCoV-2019_9_LEFT 1 + | ||
| MN908947.3 15956 15978 nCoV-2019_9_RIGHT 1 - | ||
| MN908947.3 15827 15851 nCoV-2019_10_LEFT 2 + | ||
| MN908947.3 17732 17754 nCoV-2019_10_RIGHT 2 - | ||
| MN908947.3 17571 17595 nCoV-2019_11_LEFT 1 + | ||
| MN908947.3 19463 19485 nCoV-2019_11_RIGHT 1 - | ||
| MN908947.3 19310 19332 nCoV-2019_12_LEFT 2 + | ||
| MN908947.3 21219 21241 nCoV-2019_12_RIGHT 2 - | ||
| MN908947.3 21075 21104 nCoV-2019_13_LEFT 1 + | ||
| MN908947.3 22974 22996 nCoV-2019_13_RIGHT 1 - | ||
| MN908947.3 22850 22872 nCoV-2019_14_LEFT 2 + | ||
| MN908947.3 24790 24812 nCoV-2019_14_RIGHT 2 - | ||
| MN908947.3 24649 24674 nCoV-2019_15_LEFT 1 + | ||
| MN908947.3 26520 26542 nCoV-2019_15_RIGHT 1 - | ||
| MN908947.3 26386 26413 nCoV-2019_16_LEFT 2 + | ||
| MN908947.3 28329 28351 nCoV-2019_16_RIGHT 2 - | ||
| MN908947.3 27914 27938 nCoV-2019_17_LEFT 1 + | ||
| MN908947.3 29768 29790 nCoV-2019_17_RIGHT 1 - |
32 changes: 16 additions & 16 deletions
32
resources/primer_schemes/2kb_resende_v2/nCoV-2019.scheme.bed
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,34 +1,34 @@ | ||
| MN908947.3 30 54 hCoV_1_LEFT nCoV-2019_1 | ||
| MN908947.3 2057 2079 hCoV_1_RIGHT nCoV-2019_1 | ||
| MN908947.3 3580 3603 hCoV_3_LEFT nCoV-2019_1 | ||
| MN908947.3 5526 5548 hCoV_3_RIGHT nCoV-2019_1 | ||
| MN908947.3 7092 7117 hCoV_5_LEFT nCoV-2019_1 | ||
| MN908947.3 9101 9123 hCoV_5_RIGHT nCoV-2019_1 | ||
| MN908947.3 10676 10701 hCoV_7_LEFT nCoV-2019_1 | ||
| MN908947.3 12657 12679 hCoV_7_RIGHT nCoV-2019_1 | ||
| MN908947.3 14176 14198 hCoV_9_LEFT nCoV-2019_1 | ||
| MN908947.3 15956 15978 hCoV_9_RIGHT nCoV-2019_1 | ||
| MN908947.3 17571 17595 hCoV_11_LEFT nCoV-2019_1 | ||
| MN908947.3 19463 19485 hCoV_11_RIGHT nCoV-2019_1 | ||
| MN908947.3 21075 21104 hCoV_13_LEFT nCoV-2019_1 | ||
| MN908947.3 22974 22996 hCoV_13_RIGHT nCoV-2019_1 | ||
| MN908947.3 24649 24674 hCoV_15_LEFT nCoV-2019_1 | ||
| MN908947.3 26520 26542 hCoV_15_RIGHT nCoV-2019_1 | ||
| MN908947.3 27914 27938 hCoV_17_LEFT nCoV-2019_1 | ||
| MN908947.3 29768 29790 hCoV_17_RIGHT nCoV-2019_1 | ||
| MN908947.3 1916 1942 hCoV_2_LEFT nCoV-2019_2 | ||
| MN908947.3 3714 3737 hCoV_2_RIGHT nCoV-2019_2 | ||
| MN908947.3 3580 3603 hCoV_3_LEFT nCoV-2019_1 | ||
| MN908947.3 5526 5548 hCoV_3_RIGHT nCoV-2019_1 | ||
| MN908947.3 5394 5419 hCoV_4_LEFT nCoV-2019_2 | ||
| MN908947.3 7233 7255 hCoV_4_RIGHT nCoV-2019_2 | ||
| MN908947.3 7092 7117 hCoV_5_LEFT nCoV-2019_1 | ||
| MN908947.3 9101 9123 hCoV_5_RIGHT nCoV-2019_1 | ||
| MN908947.3 8976 9000 hCoV_6_LEFT nCoV-2019_2 | ||
| MN908947.3 10815 10837 hCoV_6_RIGHT nCoV-2019_2 | ||
| MN908947.3 10676 10701 hCoV_7_LEFT nCoV-2019_1 | ||
| MN908947.3 12657 12679 hCoV_7_RIGHT nCoV-2019_1 | ||
| MN908947.3 12519 12546 hCoV_8_LEFT nCoV-2019_2 | ||
| MN908947.3 14306 14328 hCoV_8_RIGHT nCoV-2019_2 | ||
| MN908947.3 14176 14198 hCoV_9_LEFT nCoV-2019_1 | ||
| MN908947.3 15956 15978 hCoV_9_RIGHT nCoV-2019_1 | ||
| MN908947.3 15827 15851 hCoV_10_LEFT nCoV-2019_2 | ||
| MN908947.3 17732 17754 hCoV_10_RIGHT nCoV-2019_2 | ||
| MN908947.3 17571 17595 hCoV_11_LEFT nCoV-2019_1 | ||
| MN908947.3 19463 19485 hCoV_11_RIGHT nCoV-2019_1 | ||
| MN908947.3 19310 19332 hCoV_12_LEFT nCoV-2019_2 | ||
| MN908947.3 21219 21241 hCoV_12_RIGHT nCoV-2019_2 | ||
| MN908947.3 21075 21104 hCoV_13_LEFT nCoV-2019_1 | ||
| MN908947.3 22974 22996 hCoV_13_RIGHT nCoV-2019_1 | ||
| MN908947.3 22850 22872 hCoV_14_LEFT nCoV-2019_2 | ||
| MN908947.3 24790 24812 hCoV_14_RIGHT nCoV-2019_2 | ||
| MN908947.3 24649 24674 hCoV_15_LEFT nCoV-2019_1 | ||
| MN908947.3 26520 26542 hCoV_15_RIGHT nCoV-2019_1 | ||
| MN908947.3 26386 26413 hCoV_16_LEFT nCoV-2019_2 | ||
| MN908947.3 28329 28351 hCoV_16_RIGHT nCoV-2019_2 | ||
| MN908947.3 27914 27938 hCoV_17_LEFT nCoV-2019_1 | ||
| MN908947.3 29768 29790 hCoV_17_RIGHT nCoV-2019_1 |
16 changes: 8 additions & 8 deletions
16
resources/primer_schemes/2kb_resende_v2/ncov-qc_resende.scheme.bed
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,17 +1,17 @@ | ||
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| MN908947.3 22872 24790 14 nCoV-2019_2 + | ||
| MN908947.3 24674 26520 15 nCoV-2019_1 + | ||
| MN908947.3 26413 28329 16 nCoV-2019_2 + | ||
| MN908947.3 27938 29768 17 nCoV-2019_1 + |
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