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@jaleezyy jaleezyy released this 19 Mar 18:23
· 194 commits to master since this release
v1.3.0
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Learn about vigilant mode.
  • Add FreeBayes consensus and variant calling in parallel with iVar (option can be activated in config file along with BreSeq)
  • Updates to SIGNAL postprocess to indicate differences in variant calls between iVar and FreeBayes
  • Restore multiple pool samples support (now only applies to samples sharing the same sample identifier in the sample table)
  • Updated sample table generator script (generate_sample_table.sh) to handle FASTQ files for multiple pool samples
  • Updates to ncov-tools submodule (automatically formats data for ncov-tools v1.4+, but manual run of ncov-tools is still required)
  • Updated README
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