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smk-simple-slurm 1.3.0

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@jdblischak jdblischak released this 09 Aug 20:42
· 19 commits to main since this release

New status script status-sacct-robust.sh that re-runs sacct multiple times
if it fails to return a valid status. This is more robust and is recommended if
you notice Snakemake unexpectedly re-submits jobs that are still pending or
running. See Issue #9 for discussion

Example with job grouping

Link to Christian's profile for AWS ParallelCluster

Example that uses pinned conda environments (pinned-conda-envs) (requires
minimum of Snakemake version 7.8.0)

Example that inserts the current date in the log file paths (log-file-date)

Example rule with thousands of input files (many-input-files)