smk-simple-slurm 1.4.0
Warning
This is the final release to support Snakemake versions 5, 6, and 7.
Example that specifies memory in GB instead of MB (mem-gb
)
Example that shares a profile between pipelines, and includes the name of the
Snakefile in the path to the logs (shared-logs
) (Issue #12)
Update [job grouping][grouping] example to better allocate resources (requires
minimum of Snakemake version 7.11.0) (Snakemake Issue
#872)
Example that uses a job array to submit many jobs at once (job-array
)
Example that uses --slurm
(slurm-native
, requires Snakemake 7.19.0+)
Example that logs stdout and stderr to separate files (separate-stderr
)
(Issue #14)
Example that conditionally specifies a resource for a subset of rules
(TomHarrop, #16, #17)
Example that lists multiple partitions for Slurm to choose from (TomHarrop,
#16, #17)