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smk-simple-slurm 1.4.0

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@jdblischak jdblischak released this 18 Mar 21:04
· 4 commits to main since this release

Warning

This is the final release to support Snakemake versions 5, 6, and 7.

Example that specifies memory in GB instead of MB (mem-gb)

Example that shares a profile between pipelines, and includes the name of the
Snakefile in the path to the logs (shared-logs) (Issue #12)

Update [job grouping][grouping] example to better allocate resources (requires
minimum of Snakemake version 7.11.0) (Snakemake Issue
#872
)

Example that uses a job array to submit many jobs at once (job-array)

Example that uses --slurm (slurm-native, requires Snakemake 7.19.0+)

Example that logs stdout and stderr to separate files (separate-stderr)
(Issue #14)

Example that conditionally specifies a resource for a subset of rules
(TomHarrop, #16, #17)

Example that lists multiple partitions for Slurm to choose from (TomHarrop,
#16, #17)