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  1. If you use this work or any portion thereof in published work please cite it as:

    Moreno, M. A., Holder, M. T., & Sukumaran, J. (2024). DendroPy 5: a mature Python library for phylogenetic computing. Journal of Open Source Software, 9(101), 6943, https://doi.org/10.21105/joss.06943

  2. All DendroPy documentation, (non-logo) images and other media, as provided online or otherwise distributed, can be used in accordance with the Attribution-NonCommercial-ShareAlike 4.0 International License , which allows anyone to copy, modify and redistribute modifications of all or part of the DendroPy documentation as long as:

    • The license is included with all copies or redistributions.
    • the DendroPy documentation is attributed as the originating document.
    • You must give appropriate credit, provide a link to the license, and
      indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
    • You may not use the material for commercial purposes.
    • If you remix, transform, or build upon the material, you must
      distribute your contributions under the same license as the original.

  3. The DendroPy logo can be used and reproduced freely only to identify advertise, or otherwise denote association or usage of the DendroPy library.

  4. The test data files (available at dendropy/test/data) have all been (a) sourced from public domain data, (b) obtained as part of example data bundled with other applications, and typically having been used in published analyses (c) generated using analysis programs from public domain data.

    In the case of (a), the data is from GenBank, and thus in public domain. Where possible, we have maintained citation information for the original authors/work that generated the data.

    In the case of (b), the original data is also available from the public domain. Where possible, we have maintained citation information for the original authors/work that generated the data.

    In the case of (c), no program we have used places any restriction on their output. We maintain the generated text ("File generated by ... etc") to track provenance.