GATOR! - the Genome annotATOR

Installation

Download the KOfam HMMs and KofamScan from KEGG, and take note of the version number.

Gator relies on classes from this module. Install from github via pip:

pip install git+https://github.com/jeffkimbrel/jakomics.git

Name		Name	Last commit message	Last commit date
Latest commit History 49 Commits
.dockerignore		.dockerignore
.gitattributes		.gitattributes
.gitignore		.gitignore
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
__init__.py		__init__.py
annotation.py		annotation.py
brite2gator.py		brite2gator.py
gator.py		gator.py
gator_db.xlsx		gator_db.xlsx
metadata.py		metadata.py
pathway.py		pathway.py
transporters.xlsx		transporters.xlsx