Fixing README.md

jenniferlu717 · Sep 10, 2018 · 6ca53b7 · 6ca53b7
1 parent 3746e11
commit 6ca53b7
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/README.md b/README.md
@@ -120,10 +120,12 @@ The kmer distribution file is generated using the following command line:
 ## Step 2: Run Kraken 1.0 or Kraken 2.0 AND Generate a report file 
 
 Kraken 1.0 requires a 2-step process to generate the report file needed by Bracken
+
         kraken --db ${KRAKEN_DB} --threads ${THREADS} ${SAMPLE}.fq > ${SAMPLE}.kraken
         kraken-report --db ${KRAKEN_DB} ${SAMPLE}.kraken > ${SAMPLE}.kreport 
 
 Kraken 2.0 requires the addition of the --report flag 
+
         kraken2 --db ${KRAKEN_DB} --threads ${THREADS} --report ${SAMPLE}.kreport ${SAMPLE}.fq > ${SAMPLE}.kraken
 
 ## Step 3: Run Bracken for Abundance Estimation