Modifying est_abundance.py to work with Kraken2Uniq and KrakenUniq re…

…port files
jenniferlu717 · Mar 5, 2021 · f119872 · f119872
1 parent f420218
commit f119872
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/est_abundance.py b/src/est_abundance.py
@@ -139,8 +139,8 @@ def process_kraken_report(curr_str):
     #Extract relevant information
     all_reads =  int(split_str[1])
     level_reads = int(split_str[2])
-    level_type = split_str[3]
-    taxid = split_str[4] 
+    level_type = split_str[-3]
+    taxid = split_str[-2] 
     #Get name and spaces
     spaces = 0
     name = split_str[-1]