Fixing kreport2krona.py level designations

jenniferlu717 · Mar 5, 2021 · b6aeedf · b6aeedf
1 parent 0d94f83
commit b6aeedf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/kreport2krona.py b/kreport2krona.py
@@ -72,7 +72,7 @@ def process_kraken_report(curr_str):
         return []
     all_reads = int(split_str[1])
     lvl_reads = int(split_str[2])
-    level_type = split_str[-2]
+    level_type = split_str[-3]
     type2main = {'superkingdom':'D','phylum':'P',
         'class':'C','order':'O','family':'F',
         'genus':'G','species':'S'}