Docs: Added missing line break #398
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| # Test - Backend - E2E and unit tests and QC | |
| # todo: Add 'qc' parts eventually to this, or rather, codestyle (e.g. black, flake8, pylint, docstyle, etc.) | |
| # Built w/ inspiration from: https://docs.github.com/en/actions/guides/building-and-testing-python | |
| name: Test - Backend - E2E and unit tests and QC | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ develop, main ] | |
| pull_request: | |
| branches: [ develop, main ] | |
| schedule: | |
| - cron: '0 14 * * *' # every day 2pm GMT (9/10am EST/EDT) | |
| jobs: | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # os: [ ubuntu-latest, windows-latest ] | |
| os: [ ubuntu-latest ] | |
| # python-version: [ "3.10", "3.11" ] | |
| python-version: [ "3.10" ] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: 'Create env file' | |
| run: | | |
| mkdir env | |
| echo "${{ secrets.ENV_FILE }}" > env/.env | |
| - name: Create and start virtual environment | |
| run: | | |
| python3 -m venv venv | |
| source venv/bin/activate | |
| - name: Install dependencies | |
| run: | | |
| # Reactivate install upgrades of pip, wheel, &/or setuptools if needed | |
| # python -m pip install --upgrade pip | |
| # pip install --upgrade wheel | |
| # pip install --upgrade setuptools | |
| # VS Hub SDK w/ OAuth disabled: https://github.com/jhu-bids/TermHub/issues/863 | |
| # TOKEN=$(grep '^PALANTIR_ENCLAVE_AUTHENTICATION_BEARER_TOKEN=' env/.env | cut -d'=' -f2) | |
| # python3 -m pip install vshub_sdk --upgrade --extra-index-url "https://:${TOKEN}@unite.nih.gov/artifacts/api/repositories/ri.artifacts.main.repository.9bc9cc56-4b8c-4560-9bfb-fba8ade55246/contents/release/pypi/simple" --extra-index-url "https://:${TOKEN}@unite.nih.gov/artifacts/api/repositories/ri.foundry-sdk-asset-bundle.main.artifacts.repository/contents/release/pypi/simple" | |
| pip install -r requirements.txt | |
| - name: Run tests | |
| run: make test-backend |