- fixed some route signature bugs (was -> List, is -> Dict)

- updated fastapi (which chatgpt recommended while debugging)

backend/routes/db.py

@@ -286,14 +286,14 @@ async def get_concepts_post_route(request: Request, id: Union[List[str], None] =
 
 
 @router.post("/concept-ids-by-codeset-id")
-async def get_concept_ids_by_codeset_id_post(request: Request, codeset_ids: Union[List[int], None] = None) -> List:
+async def get_concept_ids_by_codeset_id_post(request: Request, codeset_ids: Union[List[int], None] = None) -> Dict:
     print(codeset_ids)
     return await get_concept_ids_by_codeset_id(request, codeset_ids)
 
 
 @router.get("/concept-ids-by-codeset-id")
 @return_err_with_trace
-async def get_concept_ids_by_codeset_id(request: Request, codeset_ids: Union[List[str], None] = Query(...)) -> List:
+async def get_concept_ids_by_codeset_id(request: Request, codeset_ids: Union[List[str], None] = Query(...)) -> Dict:
     if not codeset_ids:
         return [[]]
 
@@ -315,7 +315,8 @@ async def get_concept_ids_by_codeset_id(request: Request, codeset_ids: Union[Lis
 
 
 @router.post("/codeset-ids-by-concept-id")
-async def get_codeset_ids_by_concept_id_post(request: Request, concept_ids: Union[List[int], None] = None) -> List:
+@return_err_with_trace
+async def get_codeset_ids_by_concept_id_post(request: Request, concept_ids: Union[List[int], None] = None) -> Dict:
     rpt = Api_logger()
     await rpt.start_rpt(request, params={'concept_ids': concept_ids})
     with get_db_connection() as con:
@@ -334,8 +335,7 @@ async def get_codeset_ids_by_concept_id_post(request: Request, concept_ids: Unio
 
 
 @router.get("/codeset-ids-by-concept-id")
-@return_err_with_trace
-async def get_codeset_ids_by_concept_id(request=Request, concept_ids: Union[List[str], None] = Query(...)) -> List:
+async def get_codeset_ids_by_concept_id(request: Request, concept_ids: Union[List[str], None] = Query(...)) -> Dict:
     return await get_codeset_ids_by_concept_id_post(request, concept_ids)
 
 

requirements.txt

@@ -3,7 +3,7 @@ aiosignal==1.3.1
 airium==0.2.5
 alabaster==0.7.13
 antlr4-python3-runtime==4.9.3
-anyio==3.6.1
+anyio==3.7.1
 appdirs==1.4.4
 arrow==1.2.3
 async-timeout==4.0.2
@@ -36,7 +36,7 @@ EditorConfig==0.12.3
 et-xmlfile==1.1.0
 eutils==0.6.0
 exceptiongroup==1.1.1
-fastapi==0.79.0
+fastapi==0.104.1
 fastobo==0.12.2
 filelock==3.7.1
 fonttools==4.39.4
@@ -187,14 +187,14 @@ SQLAlchemy==2.0.15
 SQLAlchemy-Utils==0.38.3
 sssom==0.3.30
 sssom-schema==0.11.0
-starlette==0.19.1
+starlette==0.27.0
 stevedore==4.0.0
 tabulate==0.9.0
 tomli==2.0.1
 tox==3.28.0
 tqdm==4.65.0
 typeguard==2.13.3
-typing_extensions==4.3.0
+typing_extensions==4.8.0
 uri-template==1.2.0
 url-normalize==1.4.3
 urllib3==1.26.10