Changelog
Changes in v0.5.3
- Added artic V4 primers
- Organized Docker build process and output/copied script targets
- Failsafe formatting for primers based on protocol pathing
- Fix IGV Reference Header Bug
Previous changes in v0.5
- fix to intermittent bug in depth threshold calculation (which sometimes caused cartoons to display many annotations for missing regions)
- split up (and renamed) actions for staging and prerelease branches
- updated README to include normal and development usage
- added GPLv3+ license
- Added support for insertions and deletions in consensus sequences.
- Added automatic identification of pangolin ineages of consensus sequences by default.
- Added IGV plots for all variants (as well as flagged potential variants) present in consensus sequences.
- Moved container code from /root to /opt
- General speed improvements.
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- Programmatic length filter for step 2
- minimum amplicon length allowed: 90% of length of shortest amplicon in scheme
- maximum amplicon length allowed: 200nt longer than longest amplicon in scheme
- Custom primer schemes enabled
- nCoV-2019 primer_schemes added to repo
- Guppy updated to v4.4.1
Please see our Issue Tracker if you'd like to view upcoming changes, request a new feature, or notify us of a bug that needs fixing.