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diff --git a/docs/404.html b/docs/404.html
@@ -22,7 +22,7 @@
 
 
 
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@@ -91,11 +91,9 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="variant-analysis-with-seqr.html"><a href="variant-analysis-with-seqr.html"><i class="fa fa-check"></i><b>3</b> Variant Analysis with seqr</a></li>
-<li class="chapter" data-level="4" data-path="biodigs-in-the-classroom.html"><a href="biodigs-in-the-classroom.html"><i class="fa fa-check"></i><b>4</b> BioDIGS in the Classroom</a></li>
-<li class="chapter" data-level="5" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>5</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>

diff --git a/docs/About.md b/docs/About.md
@@ -53,7 +53,7 @@ These credits are based on our [course contributors table guidelines](https://gi
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diff --git a/docs/about-the-authors.html b/docs/about-the-authors.html
@@ -22,7 +22,7 @@
 
 
 
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+<meta name="date" content="2024-08-30" />
 
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@@ -91,11 +91,9 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="variant-analysis-with-seqr.html"><a href="variant-analysis-with-seqr.html"><i class="fa fa-check"></i><b>3</b> Variant Analysis with seqr</a></li>
-<li class="chapter" data-level="4" data-path="biodigs-in-the-classroom.html"><a href="biodigs-in-the-classroom.html"><i class="fa fa-check"></i><b>4</b> BioDIGS in the Classroom</a></li>
-<li class="chapter" data-level="5" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>5</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>
@@ -274,7 +272,7 @@ <h1>About the Authors<a href="about-the-authors.html#about-the-authors" class="a
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-##  date     2024-08-09
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diff --git a/docs/index.html b/docs/index.html
@@ -22,7 +22,7 @@
 
 
 
-<meta name="date" content="2024-08-09" />
+<meta name="date" content="2024-08-30" />
 
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@@ -91,11 +91,9 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="variant-analysis-with-seqr.html"><a href="variant-analysis-with-seqr.html"><i class="fa fa-check"></i><b>3</b> Variant Analysis with seqr</a></li>
-<li class="chapter" data-level="4" data-path="biodigs-in-the-classroom.html"><a href="biodigs-in-the-classroom.html"><i class="fa fa-check"></i><b>4</b> BioDIGS in the Classroom</a></li>
-<li class="chapter" data-level="5" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>5</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>
@@ -133,7 +131,7 @@ <h1>
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-<p class="date"><em>August 09, 2024</em></p>
+<p class="date"><em>August 30, 2024</em></p>
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diff --git a/docs/index.md b/docs/index.md
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diff --git a/docs/organizer-guide.html b/docs/organizer-guide.html
@@ -22,7 +22,7 @@
 
 
 
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@@ -91,11 +91,9 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="variant-analysis-with-seqr.html"><a href="variant-analysis-with-seqr.html"><i class="fa fa-check"></i><b>3</b> Variant Analysis with seqr</a></li>
-<li class="chapter" data-level="4" data-path="biodigs-in-the-classroom.html"><a href="biodigs-in-the-classroom.html"><i class="fa fa-check"></i><b>4</b> BioDIGS in the Classroom</a></li>
-<li class="chapter" data-level="5" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>5</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>

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 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="variant-analysis-with-seqr.html"><a href="variant-analysis-with-seqr.html"><i class="fa fa-check"></i><b>3</b> Variant Analysis with seqr</a></li>
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-<li class="chapter" data-level="5" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>5</b> Wrap a Tool with WDL</a></li>
+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
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-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>
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diff --git a/docs/reference-keys.txt b/docs/reference-keys.txt
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@@ -91,11 +91,9 @@
 <li class="part"><span><b>Topics</b></span></li>
 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
-<li class="chapter" data-level="3" data-path="variant-analysis-with-seqr.html"><a href="variant-analysis-with-seqr.html"><i class="fa fa-check"></i><b>3</b> Variant Analysis with seqr</a></li>
-<li class="chapter" data-level="4" data-path="biodigs-in-the-classroom.html"><a href="biodigs-in-the-classroom.html"><i class="fa fa-check"></i><b>4</b> BioDIGS in the Classroom</a></li>
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+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
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-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>
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diff --git a/docs/scalable-ml-and-data-science.html b/docs/scalable-ml-and-data-science.html
@@ -22,7 +22,7 @@
 
 
 
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 <li class="chapter" data-level="1" data-path="scalable-ml-and-data-science.html"><a href="scalable-ml-and-data-science.html"><i class="fa fa-check"></i><b>1</b> Scalable ML and Data Science</a></li>
 <li class="chapter" data-level="2" data-path="polygenic-risk-score-analysis.html"><a href="polygenic-risk-score-analysis.html"><i class="fa fa-check"></i><b>2</b> Polygenic Risk Score Analysis</a></li>
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+<li class="chapter" data-level="3" data-path="wrap-a-tool-with-wdl.html"><a href="wrap-a-tool-with-wdl.html"><i class="fa fa-check"></i><b>3</b> Wrap a Tool with WDL</a></li>
 <li class="chapter" data-level="" data-path="about-the-authors.html"><a href="about-the-authors.html"><i class="fa fa-check"></i>About the Authors</a></li>
-<li class="chapter" data-level="6" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>6</b> References</a></li>
+<li class="chapter" data-level="4" data-path="references.html"><a href="references.html"><i class="fa fa-check"></i><b>4</b> References</a></li>
 <li class="divider"></li>
 <p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template" target="blank" > This content was published with</a> <a href="https://bookdown.org/" target="blank"> bookdown by: </a> </p>
 <p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>