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[PRS] add session description #23

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Nov 7, 2024
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[PRS] add session description #23

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9b64365
add session description
ehumph Nov 1, 2024
7e9b709
adding specialized vocabulary to dictionary
ehumph Nov 1, 2024
c6d02ed
correct AnVIL capitalization
ehumph Nov 6, 2024
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12 changes: 11 additions & 1 deletion prs-analysis.Rmd
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Led by: Matthew Lebo, Harvard Medical School

AnVIL Outreach coordinator: Elizabeth Humphries
AnVIL Outreach coordinator: Elizabeth Humphries

About This Track



This track, run by the AnVIL Clinical Resource team, will consist of both an overview and a hands-on workshop to provide individuals with an understanding of polygenic scores and how to run and evaluate them in AnVIL. First, we will level-set by providing an overview of the current state of polygenic analysis, with a focus on polygenic risk scores (PRS). Next, we will jointly work with participants to run PRS analyses in AnVIL using the WDL framework. These tasks will increase in complexity in terms of analytical components of the workflow, with the goal of enabling users to run the WDL on their own. We will also engage with participants to get feedback and create user-friendly documents to enable processing of this workflow once published to the broader community. Finally, we will work with more advanced users to generate a new WDL focused on the evaluation of PRS among a cohort of individuals.



Participants are not required to supply their own data, as publicly available data and an AnVIL workspace will be provided as part of the CoFest track. Users who are interested in running the analyses on their own data are welcome, but should have their own workspace in which to run the analyses.
4 changes: 4 additions & 0 deletions resources/dictionary.txt
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Expand Up @@ -2,6 +2,7 @@ ACC
Anshul
AnVIL
AnVIL's
ATAC
BioDIGS
BioC
BiocManager
Expand All @@ -12,6 +13,7 @@ Bloomberg
callout
Callout
Carpinteyro
ChIP
Cliffe
CoFest
cofests
Expand Down Expand Up @@ -50,6 +52,7 @@ OTTR
ottrpal
pipelining
plotMDS
polygenic
Polygenic
pre
precompiled
Expand All @@ -70,6 +73,7 @@ underserved
Vivek
WDL
wip
workspaces
Workspaces
Workspace's
www
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