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25 changes: 19 additions & 6 deletions docs/01-intro.md
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## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2024-06-26
## date 2024-11-07
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## askpass 1.2.0 2023-09-03 [1] RSPM (R 4.3.0)
## bookdown 0.39.1 2024-06-11 [1] Github (rstudio/bookdown@f244cf1)
## bookdown 0.41 2024-10-16 [1] CRAN (R 4.3.2)
## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
## chromote 0.3.1 2024-08-30 [1] CRAN (R 4.3.2)
## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0)
## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0)
## dplyr 1.1.4 2023-11-17 [1] RSPM (R 4.3.0)
## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0)
## evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0)
## fansi 1.0.6 2023-12-08 [1] RSPM (R 4.3.0)
## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0)
## generics 0.1.3 2022-07-05 [1] RSPM (R 4.3.0)
## glue 1.7.0 2024-01-09 [1] RSPM (R 4.3.0)
## hms 1.1.3 2023-03-21 [1] RSPM (R 4.3.0)
## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0)
## htmlwidgets 1.6.4 2023-12-06 [1] RSPM (R 4.3.0)
## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0)
## httr 1.4.7 2023-08-15 [1] RSPM (R 4.3.0)
## janitor 2.2.0 2023-02-02 [1] RSPM (R 4.3.0)
## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0)
## knitr 1.47.3 2024-06-11 [1] Github (yihui/knitr@e1edd34)
## knitr 1.48 2024-07-07 [1] CRAN (R 4.3.2)
## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0)
## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0)
## lubridate 1.9.3 2023-09-27 [1] RSPM (R 4.3.0)
## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0)
## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0)
## openssl 2.1.1 2023-09-25 [1] RSPM (R 4.3.0)
## ottrpal 1.2.1 2024-06-11 [1] Github (jhudsl/ottrpal@828539f)
## ottrpal 1.3.0 2024-10-23 [1] Github (jhudsl/ottrpal@2e19782)
## pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0)
## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0)
## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0)
## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0)
## processx 3.8.3 2023-12-10 [1] RSPM (R 4.3.0)
## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0)
## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0)
## ps 1.7.6 2024-01-18 [1] RSPM (R 4.3.0)
## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0)
## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0)
## readr 2.1.5 2024-01-10 [1] RSPM (R 4.3.0)
## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2)
## rmarkdown 2.27.1 2024-06-11 [1] Github (rstudio/rmarkdown@e1c93a9)
## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0)
## rprojroot 2.0.4 2023-11-05 [1] CRAN (R 4.3.2)
## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0)
## snakecase 0.11.1 2023-08-27 [1] RSPM (R 4.3.0)
## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0)
## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0)
## tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.2)
## tidyselect 1.2.0 2022-10-10 [1] RSPM (R 4.3.0)
## timechange 0.3.0 2024-01-18 [1] RSPM (R 4.3.0)
## tzdb 0.4.0 2023-05-12 [1] RSPM (R 4.3.0)
## urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0)
## usethis 2.2.3 2024-02-19 [1] RSPM (R 4.3.0)
## utf8 1.2.4 2023-10-22 [1] RSPM (R 4.3.0)
## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0)
## xfun 0.44.4 2024-06-11 [1] Github (yihui/xfun@9da62cc)
## webshot2 0.1.1 2023-08-11 [1] CRAN (R 4.3.2)
## websocket 1.4.2 2024-07-22 [1] CRAN (R 4.3.2)
## xfun 0.48 2024-10-03 [1] CRAN (R 4.3.2)
## xml2 1.3.6 2023-12-04 [1] RSPM (R 4.3.0)
## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0)
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32 changes: 25 additions & 7 deletions docs/02-chapter_of_course.md
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Expand Up @@ -124,6 +124,11 @@ To embed videos in your course, you can use `knitr::include_url()` like this:
Note that you should use `echo=FALSE` in the code chunk because we don't want the code part of this to show up. If you are unfamiliar with [how R Markdown code chunks work, read this](https://rmarkdown.rstudio.com/lesson-3.html).



```
## `google-chrome`, `chromium-browser` and `chrome` were not found. Try setting the `CHROMOTE_CHROME` environment variable to the executable of a Chromium-based browser, such as Google Chrome, Chromium or Brave or adding one of these executables to your PATH.
```

<iframe src="https://www.youtube.com/embed/VOCYL-FNbr0" width="100%" height="400px" data-external="1"></iframe>

### Using HTML
Expand Down Expand Up @@ -298,64 +303,77 @@ devtools::session_info()
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2024-06-26
## date 2024-11-07
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## askpass 1.2.0 2023-09-03 [1] RSPM (R 4.3.0)
## bookdown 0.39.1 2024-06-11 [1] Github (rstudio/bookdown@f244cf1)
## bookdown 0.41 2024-10-16 [1] CRAN (R 4.3.2)
## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
## chromote 0.3.1 2024-08-30 [1] CRAN (R 4.3.2)
## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0)
## curl 5.2.0 2023-12-08 [1] RSPM (R 4.3.0)
## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0)
## dplyr 1.1.4 2023-11-17 [1] RSPM (R 4.3.0)
## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0)
## evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0)
## fansi 1.0.6 2023-12-08 [1] RSPM (R 4.3.0)
## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0)
## generics 0.1.3 2022-07-05 [1] RSPM (R 4.3.0)
## glue 1.7.0 2024-01-09 [1] RSPM (R 4.3.0)
## highr 0.10 2022-12-22 [1] RSPM (R 4.3.0)
## highr 0.11 2024-05-26 [1] CRAN (R 4.3.2)
## hms 1.1.3 2023-03-21 [1] RSPM (R 4.3.0)
## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0)
## htmlwidgets 1.6.4 2023-12-06 [1] RSPM (R 4.3.0)
## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0)
## httr 1.4.7 2023-08-15 [1] RSPM (R 4.3.0)
## janitor 2.2.0 2023-02-02 [1] RSPM (R 4.3.0)
## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0)
## knitr 1.47.3 2024-06-11 [1] Github (yihui/knitr@e1edd34)
## knitr 1.48 2024-07-07 [1] CRAN (R 4.3.2)
## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0)
## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0)
## lubridate 1.9.3 2023-09-27 [1] RSPM (R 4.3.0)
## magrittr * 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0)
## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0)
## openssl 2.1.1 2023-09-25 [1] RSPM (R 4.3.0)
## ottrpal 1.2.1 2024-06-11 [1] Github (jhudsl/ottrpal@828539f)
## ottrpal 1.3.0 2024-10-23 [1] Github (jhudsl/ottrpal@2e19782)
## pillar 1.9.0 2023-03-22 [1] RSPM (R 4.3.0)
## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0)
## pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.3.0)
## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0)
## processx 3.8.3 2023-12-10 [1] RSPM (R 4.3.0)
## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0)
## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0)
## ps 1.7.6 2024-01-18 [1] RSPM (R 4.3.0)
## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0)
## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0)
## readr 2.1.5 2024-01-10 [1] RSPM (R 4.3.0)
## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2)
## rmarkdown 2.27.1 2024-06-11 [1] Github (rstudio/rmarkdown@e1c93a9)
## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0)
## rprojroot 2.0.4 2023-11-05 [1] CRAN (R 4.3.2)
## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0)
## snakecase 0.11.1 2023-08-27 [1] RSPM (R 4.3.0)
## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0)
## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0)
## tibble 3.2.1 2023-03-20 [1] CRAN (R 4.3.2)
## tidyselect 1.2.0 2022-10-10 [1] RSPM (R 4.3.0)
## timechange 0.3.0 2024-01-18 [1] RSPM (R 4.3.0)
## tzdb 0.4.0 2023-05-12 [1] RSPM (R 4.3.0)
## urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0)
## usethis 2.2.3 2024-02-19 [1] RSPM (R 4.3.0)
## utf8 1.2.4 2023-10-22 [1] RSPM (R 4.3.0)
## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0)
## xfun 0.44.4 2024-06-11 [1] Github (yihui/xfun@9da62cc)
## webshot2 0.1.1 2023-08-11 [1] CRAN (R 4.3.2)
## websocket 1.4.2 2024-07-22 [1] CRAN (R 4.3.2)
## xfun 0.48 2024-10-03 [1] CRAN (R 4.3.2)
## xml2 1.3.6 2023-12-04 [1] RSPM (R 4.3.0)
## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0)
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3 changes: 2 additions & 1 deletion docs/404.html
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Expand Up @@ -6,7 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Page not found | Course Name</title>
<meta name="description" content="Description about Course/Book." />
<meta name="generator" content="bookdown 0.39.1 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.41 and GitBook 2.6.7" />

<meta property="og:title" content="Page not found | Course Name" />
<meta property="og:type" content="book" />
Expand Down Expand Up @@ -208,6 +208,7 @@
<p style="text-align:center;"> <a href="https://github.com/jhudsl/OTTR_Template"> The OTTR Template by:</a></p>
<p style="text-align:center;"> <a href="http://jhudatascience.org/"> The Johns Hopkins Data Science Lab </a></p>
<p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>

</ul>

</nav>
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16 changes: 9 additions & 7 deletions docs/About.md
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Expand Up @@ -25,7 +25,7 @@ These credits are based on our [course contributors table guidelines](https://ww
|Template Publishing Engineers|[Candace Savonen], [Carrie Wright], [Ava Hoffman]|
|Publishing Maintenance Engineer|[Candace Savonen]|
|Technical Publishing Stylists|[Carrie Wright], [Ava Hoffman], [Candace Savonen]|
|Package Developers ([ottrpal]) [Candace Savonen], [John Muschelli], [Carrie Wright]|
|Package Developers ([ottrpal]) [Candace Savonen], [Ava Hoffman], [Howard Baek], [Kate Isaac], [Carrie Wright], [John Muschelli]|
|**Art and Design**||
|Illustrator(s)| Created graphics for the course|
|Figure Artist(s)| Created figures/plots for course|
Expand All @@ -51,12 +51,12 @@ These credits are based on our [course contributors table guidelines](https://ww
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2024-06-26
## date 2024-11-07
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## bookdown 0.39.1 2024-06-11 [1] Github (rstudio/bookdown@f244cf1)
## bookdown 0.41 2024-10-16 [1] CRAN (R 4.3.2)
## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0)
## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0)
## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
Expand All @@ -69,7 +69,7 @@ These credits are based on our [course contributors table guidelines](https://ww
## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0)
## htmlwidgets 1.6.4 2023-12-06 [1] RSPM (R 4.3.0)
## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0)
## knitr 1.47.3 2024-06-11 [1] Github (yihui/knitr@e1edd34)
## knitr 1.48 2024-07-07 [1] CRAN (R 4.3.2)
## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0)
## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0)
## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
Expand All @@ -85,15 +85,15 @@ These credits are based on our [course contributors table guidelines](https://ww
## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0)
## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2)
## rmarkdown 2.27.1 2024-06-11 [1] Github (rstudio/rmarkdown@e1c93a9)
## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0)
## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0)
## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0)
## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0)
## urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0)
## usethis 2.2.3 2024-02-19 [1] RSPM (R 4.3.0)
## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0)
## xfun 0.44.4 2024-06-11 [1] Github (yihui/xfun@9da62cc)
## xfun 0.48 2024-10-03 [1] CRAN (R 4.3.2)
## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0)
##
Expand All @@ -110,12 +110,14 @@ These credits are based on our [course contributors table guidelines](https://ww
[Candace Savonen]: https://www.cansavvy.com/
[Carrie Wright]: https://carriewright11.github.io/
[Ava Hoffman]: https://www.avahoffman.com/
[Howard Baek]: https://www.linkedin.com/in/howard-baik/
[Kate Isaac]: https://kweav.github.io/

<!-- Links -->

[ottrpal]: https://github.com/jhudsl/ottrpal

<!-- Fill out this table using these instructions: https://github.com/jhudsl/OTTR_Template/wiki/How-to-give-credits
<!-- Fill out this table using these instructions: https://www.ottrproject.org/more_features.html#giving-credits-to-contributors
For JHU courses, You will need to add Ira as a credit:
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