now testing scprint

.github/workflows/main.yml

@@ -6,9 +6,9 @@ name: CI
 on:
   # Triggers the workflow on push or pull request events but only for the main branch
   push:
-    branches: [ main ]
+    branches: [main]
   pull_request:
-    branches: [ main ]
+    branches: [main]
 
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
@@ -50,8 +50,8 @@ jobs:
         run: make test
       - name: "Upload coverage to Codecov"
         uses: codecov/codecov-action@v4
-        # with:
-        #   fail_ci_if_error: true
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
 
   tests_mac:
     needs: linter

Makefile

@@ -22,7 +22,7 @@ show:             ## Show the current environment.
 install:          ## Install the project in dev mode.
 	@if [ "$(USING_POETRY)" ]; then poetry install && exit; fi
 	@echo "Don't forget to run 'make virtualenv' if you got errors."
-	$(ENV_PREFIX)pip install -e .[test]
+	$(ENV_PREFIX)pip install -e '.[dev]'
 
 .PHONY: fmt
 fmt:              ## Format code using black & isort.

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "scprint"
-version = "1.0.12"
+version = "1.0.13"
 license = "MIT"
 description = "scPRINT is a Large Cell Model for Gene Network Inference, Denoising and more from scRNAseq data"
 authors = ["jeremie kalfon"]