github page updates

jlmaier12 · Dec 20, 2024 · 882b1e4 · 882b1e4
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Showing 47 changed files with 69 additions and 53 deletions.
diff --git a/404.html b/404.html
diff --git a/articles/TrIdent-vignette.html b/articles/TrIdent-vignette.html
diff --git a/articles/index.html b/articles/index.html
diff --git a/authors.html b/authors.html
diff --git a/index.html b/index.html
diff --git a/news/index.html b/news/index.html
diff --git a/pkgdown.yml b/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 2.1.1
 pkgdown_sha: ~
 articles:
   TrIdent-vignette: TrIdent-vignette.html
-last_built: 2024-12-20T14:16Z
+last_built: 2024-12-20T17:05Z
 urls:
   reference: https://jlmaier12.github.io/TrIdent/reference
   article: https://jlmaier12.github.io/TrIdent/articles
diff --git a/reference/NARemover.html b/reference/NARemover.html
diff --git a/reference/TrIdent-package.html b/reference/TrIdent-package.html
diff --git a/reference/TrIdentClassifier.html b/reference/TrIdentClassifier.html
diff --git a/reference/TrIdentSampleOutput.html b/reference/TrIdentSampleOutput.html
diff --git a/reference/VLPFractionSamplePileup.html b/reference/VLPFractionSamplePileup.html
diff --git a/reference/VLPtoWCRatioCalc.html b/reference/VLPtoWCRatioCalc.html
diff --git a/reference/WholeCommunitySamplePileup.html b/reference/WholeCommunitySamplePileup.html
diff --git a/reference/allPatternMatches.html b/reference/allPatternMatches.html
diff --git a/reference/allProphageLikeClassifs.html b/reference/allProphageLikeClassifs.html
diff --git a/reference/allSlopingClassifs.html b/reference/allSlopingClassifs.html
diff --git a/reference/blockBuilder.html b/reference/blockBuilder.html
diff --git a/reference/blockTranslator.html b/reference/blockTranslator.html
diff --git a/reference/changeSlope.html b/reference/changeSlope.html
diff --git a/reference/changeSlopeWStart.html b/reference/changeSlopeWStart.html
diff --git a/reference/changeWindowSize.html b/reference/changeWindowSize.html
diff --git a/reference/contigClassSumm.html b/reference/contigClassSumm.html
diff --git a/reference/fullSlope.html b/reference/fullSlope.html
diff --git a/reference/index.html b/reference/index.html
diff --git a/reference/leftRightBlockTranslater.html b/reference/leftRightBlockTranslater.html
diff --git a/reference/makeBlockPattern.html b/reference/makeBlockPattern.html
diff --git a/reference/makeFullSlopes.html b/reference/makeFullSlopes.html
diff --git a/reference/makeSlopesWStarts.html b/reference/makeSlopesWStarts.html
diff --git a/reference/noPattern.html b/reference/noPattern.html
diff --git a/reference/patternBuilder.html b/reference/patternBuilder.html
diff --git a/reference/patternMatchSize.html b/reference/patternMatchSize.html
diff --git a/reference/patternMatcher.html b/reference/patternMatcher.html