Merge pull request #3 from jordenrabasco/main

Testing data updates
jlmaier12 · Dec 14, 2024 · 923916c · 923916c
2 parents 6ff8f10 + 78f9534
commit 923916c
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Showing 4 changed files with 5 additions and 5 deletions.
diff --git a/R/sysdata.rda b/R/sysdata.rda
diff --git a/tests/testthat/test-TrIdentClassifier.R b/tests/testthat/test-TrIdentClassifier.R
@@ -5,5 +5,5 @@ test_that("default_TridentClassifer", {
         VLPpileup = VLPFractionSamplePileup,
         WCpileup = WholeCommunitySamplePileup
     )
-    expect_equal(temp_tri_results, trident_results_v1)
+    expect_equal(temp_tri_results, TrIdentOutput)
 })
diff --git a/tests/testthat/test-plotTrIdentResults.R b/tests/testthat/test-plotTrIdentResults.R
@@ -10,7 +10,7 @@ test_that("plotTrIdentResults", {
         WCpileup = WholeCommunitySamplePileup,
         TrIdentResults = TrIdent_results
     )
-    copied_TrIdent_patternmatches <- TrIdent_patternmatches$plot
+    copied_TrIdent_patternmatches <- TrIdentPlots$plot
     temp_patternmatcher <- temp_patternmatcher$plot
     expect_equal(copied_TrIdent_patternmatches, temp_patternmatcher)
 })
diff --git a/tests/testthat/test-specializedTransductionID.R b/tests/testthat/test-specializedTransductionID.R
@@ -9,7 +9,7 @@ test_that("specializedTransductionID", {
         VLPpileup = VLPFractionSamplePileup,
         TrIdentResults = TrIdent_results
     )
-    copied_Specialized_transduction <- Specialized_transduction
+    copied_Specialized_transduction <- SpecTransduc
     temp_plot <- temp_Specialized_transduction$Plots$plot
     copied_plot <- copied_Specialized_transduction$Plots$plot
     expect_equal(
@@ -23,9 +23,9 @@ test_that("specializedTransductionID", {
         TrIdentResults = TrIdent_results,
         specificContig = "NODE_62"
     )
-    copied_Specialized_transduction_NODE62 <- Specialized_transduction_NODE62
+    copied_Specialized_transduction_NODE62 <- SpecTransduc_node62
     expect_equal(
-        temp_Specialized_transduction_n44$Plots$plot,
+      temp_Specialized_transduction_n62$Plots$plot,
         copied_Specialized_transduction_NODE62$Plots$plot
     )
 })