Recurrent spiking neural network to simulate the consolidation of memory representations based on synaptic tagging and capture

• simulation code and shell scripts added for
  • simulations with varied neuromodulation to regulate the synthesis of plasticity-related proteins
  • testing the model implementation with small example simulations
• Python functions added for
  • fitting temporal traces with linear readout from the network
  • performing principal component analysis (PCA) on the network dynamics
  • extracting pattern completion coefficient Q and mutual information MI from spike raster data
• interactive Jupyter notebook for reproducing the figures of paper 3 added
• larger parts of the code cleaned