I work remotely for MD Anderson Cancer Center in Houston Texas as a Senior Systems Analyst where I do software design, development and testing.
Books I've published for sale on Amazon
Software repositories and websites with I am involved (Source code contributions and/or issue reporting and/or documentation)
- Info - PathwaysWeb: a gene pathways API with directional interactions, expanded gene ontology, and versioning (https://pubmed.ncbi.nlm.nih.gov/32269754/)
- PathwaysBrowser website
- PathwaysWeb REST-like API
Related Github Repositories:
- NGCHM Viewer Github Repo
- GUI Heatmap Builder Github Repo -- Live Software
- Galaxy NGCHM Builder Github Repo -- Galaxy Toolshed Galaxy Docker Image -- A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data
- GenePattern NGCHM Builder and Viewer Basic NGCHM Builder Github Repo -- GenePattern NGCHM Viewer
- NGCHM-R : R Package for building NGCHMs Github Repo
- NGCHM RStudio Docker container Github Repo
- PathwaysMapper plugin for NGCHM Viewer Github Repo
- 2D ScatterPlot plugin for NGCHM Viewer Github Repo
- 3d ScatterPlot plugin for NGCHM Viewer Github Repo
- RPPASPACE R package on CRAN
- Github Repo
- Guide to Use of RPPASPACE
- Predecessor package SuperCurve RForge Packages - Info
- MBatch and MBatchUtils R Packages and MBatch Stand-Alone Docker Image Github Repo
- MBatch Omics Browser
- Info
- Standardized Data Github Repo
- DataAPI Github Repo
- An interactive tool for viewing the location and annotation of genes on human chromosomes.
- Ideogram Viewer Website
- Info
- A comprehensive resource for accessing, visualizing, and analyzing cancer functional proteomics.
- TCPA Website
- Info
- TCPA: a resource for cancer functional proteomics data
- A tool for investigating alternative mRNA splicing in next generation mRNA sequence data
- SpliceSeq Website
- Github Repo
- SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts
- Info
- Script of Scripts : An interactive multi-language data analysis environment
- SoS Notebook: an interactive multi-language data analysis environment
- Github Repo
- Info
- TANRIC Website
- TANRIC: An Interactive Open Platform to Explore the Function of lncRNAs in Cancer
- Info
- TransVar is a multi-way annotator for genetic elements and genetic variations.
- TransVar Website
- User Guide
- Info
- TransVar: a multilevel variant annotator for precision genomics