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  1. CodeMLParser_from_Silva2014_RustPhylogenomics CodeMLParser_from_Silva2014_RustPhylogenomics Public

    Forked from ODiogoSilva/Silva2014_RustPhylogenomics

    A quickfix to the CodeML Parser script used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"

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  2. Result_Filter_for_CodeML Result_Filter_for_CodeML Public

    A practical and easy to use approach to filter the results from CodeML output files.

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  3. Hyphy_Parsers Hyphy_Parsers Public

    A collection of parsers for performing Hyphy analyses on several genes at a time.

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  4. OrthoFinder_OGFilter OrthoFinder_OGFilter Public

    A script to filter orthologs resulting from an OrthoFinder run based on the % of missing taxa and number of copies.

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  5. ESFA ESFA Public

    Extract Sites From Alignments

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