Updates

examples/applyctf.py

@@ -0,0 +1,55 @@
+import sqlite3
+
+db = sqlite3.connect("database.db")
+cur = db.cursor()
+
+cur.execute("select image_assets.filename, estimated_ctf_parameters.defocus1, estimated_ctf_parameters.defocus2, estimated_ctf_parameters.defocus_angle, estimated_ctf_parameters.additional_phase_shift from image_assets where image_assets.filename like '%niceview_00182%'")
+print(cur.fetchall())
+
+
+
+
+import os
+from subprocess import Popen, PIPE
+from collections import namedtuple
+
+ApplyCtfParameters = namedtuple("input",[
+    "output",
+    "pixelsize",
+    "kV",
+    "cs",
+    "ac",
+    "file",
+    "defocus1",
+    "defocus2",
+    "astigmatism_angle",
+    "phase_shift",
+    "flip_only",
+    "contrast"
+
+],defaults = [
+    "in.mrc",
+    "out.mrc",
+    40.0,
+    300.0,
+    2.7,
+    0.07,
+    "NO",
+    100000,
+    100000,
+    0.0,
+    0.0,
+    "YES",
+    "YES",
+
+])
+
+para = ApplyCtfParameters(input = "in.mrc"
+                            output="out.mrc",
+                          defocus1 = 300000,
+                          defocus2 = 300000,
+                          astigmatism_angle=0.0)
+
+if True:
+    proc = Popen("applyctf", shell=True, stdin=PIPE)
+    proc.communicate(input=str.encode('\n'.join(map(str,list(para)))))