v2023.9.25

• 2023.9.25 - Added AggregateNetwork class, evenness/entropy calculations, and .mad for median absolute devation to Symmetry.
• 2023.9.5 - Changed method="biweight_midcorrelation" to method="bicor". Changed default method to pearson instead of rho to generalize (though, please use rho, phi, or pcorr_bshrink for compositional data). Added partial_correlation_with_basis_shrinkage support from comositional package using method="pcorr_bshrink" to use similar terminology with Propr and ppcorr R packages.

ensemble-networkx_2023.8.15

2023.8.15 - Added ClusteredNetwork for wrapper around community_detection and edge_cluster_cooccurrence (formerly known as cluster_homogeneity).

2023.8.14 - Changed dense to redundant to be more consistent with scikit-bio. Added confidence_interval to ensemble networks. Changed default metrics to np.median and stats.median_abs_deviation. Changed default sampling_size from 0.618... to 1.0 and with_replacement=False to with_replacement=True.

ensemble-networkx_2023.7.20

2023.7.20 - Added pairwise_mcc with Mathew's Correlation Coefficient for binary correlations. Functionality also available in EnsembleAssociationNetwork (@411an13)

ensemble-networkx_2023.7.18

Fixed issue with SampleSpecificPerturbationNetwork not being able to handle X.index with a .name that was not NoneType. Created a hack to allow pd.MultiIndex support (converts to strings and warns). Made include_reference_for_samplespecific=True the new default which creates a clone of the reference and uses that as the background network. Added is_square to Symmetric object.

ensemble-networkx_2020.09.04

v2020.09.04

Added DifferentialEnsembleAssociationNetwork