MAINT: _biophysics -> set_biophysics

hnn_core/basket.py

@@ -33,7 +33,7 @@ def __init__(self, gid, pos, cell_name='Basket'):
         self.shape_soma()
         self.synapses = dict()
 
-    def _biophysics(self):
+    def set_biophysics(self):
         self.soma.insert('hh2')
 
     def _get_soma_props(self, cell_name, pos):
@@ -71,7 +71,7 @@ def __init__(self, gid=-1, pos=-1):
         self.celltype = 'L2_basket'
 
         self._synapse_create()
-        self._biophysics()
+        self.set_biophysics()
         self.sect_loc = dict(proximal=['soma'], distal=['soma'])
 
 
@@ -84,5 +84,5 @@ def __init__(self, gid=-1, pos=-1):
         self.celltype = 'L5_basket'
 
         self._synapse_create()
-        self._biophysics()
+        self.set_biophysics()
         self.sect_loc = dict(proximal=['soma'], distal=[])

hnn_core/pyramidal.py

@@ -86,7 +86,7 @@ def __init__(self, gid, pos, celltype, params):
         self.set_geometry(p_dend)
 
         # biophysics
-        self._biophysics(p_all)
+        self.set_biophysics(p_all)
 
         # insert dipole
         yscale = self.secs()[3]
@@ -387,7 +387,7 @@ def secs(self):
         ]
         return sec_pts, sec_lens, sec_diams, sec_scales, topology
 
-    def _biophysics(self, p_all):
+    def set_biophysics(self, p_all):
         """Adds biophysics to soma."""
 
         # Insert 'hh2' mechanism
@@ -529,7 +529,7 @@ def _get_soma_props(self, pos, p_all):
             'name': 'L5Pyr',
         }
 
-    def _biophysics(self, p_all):
+    def set_biophysics(self, p_all):
         "Set the biophysics for the default Pyramidal cell."
 
         # Insert 'hh2' mechanism